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[191266_at] 7TM chemoreceptor, str family

Description T01G6.3 /REP_DB=WormBase Gene ID /WP=CE25096 /GEN=str-196 /TR=Q9GUD1 /GB=AAG24184.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 60      4grp_total > 03      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 12.2
(-1.9)
A 		5.7
(-3)
A 		7.5
(-2.7)
A 		40.9
(3)
A 		35
B 20.8
(-1.6)
A 		13.3
(-3)
A 		13.5
(-3)
A 		45
(3)
A 		32
C 14.6
(-2)
A 		9.3
(-2.5)
A 		3.6
(-3)
A 		69.7
(3)
P 		66
avr 15.9
(-1.9) 		9.4
(-2.8) 		8.2
(-3) 		51.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12.2
(-1)
A 		1.6
(-3)
A 		33.6
(3)
A 		12
(-1.1)
A 		4.8
(-2.4)
A 		2.7
(-2.8)
A 		32
B 14.8
(3)
A 		5.5
(-1.5)
A 		14.2
(2.7)
A 		10.9
(1.1)
A 		2.5
(-3)
A 		3.2
(-2.7)
A 		12
C 1.2
(-3)
A 		20.8
(-0.2)
A 		2.5
(-2.8)
A 		43.6
(3)
A 		5.5
(-2.4)
A 		14.7
(-1.1)
A 		42
avr 9.4
(-1.3) 		9.3
(-1.3) 		16.8
(1.2) 		22.2
(3) 		4.3
(-3) 		6.9
(-2.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.4
(1)
A 		1.2
(-3)
A 		2
(-2)
A 		6
(3)
A 		5
B 6.6
(0.2)
A 		3.3
(-2.8)
A 		3.1
(-3)
A 		9.6
(3)
A 		7
C 4.8
(-1)
A 		2.7
(-2.2)
A 		1.3
(-3)
A 		11.7
(3)
P 		10
avr 5.3
(-0.3) 		2.4
(-2.7) 		2.1
(-3) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.2
(-1.6)
A 		0.6
(-3)
A 		7.3
(3)
A 		3
(-0.9)
A 		1.4
(-2.3)
A 		0.7
(-2.9)
A 		7
B 5.1
(3)
A 		1.8
(-1.8)
A 		3.4
(0.5)
A 		2.9
(-0.2)
A 		1
(-3)
A 		1.2
(-2.7)
A 		4
C 0.5
(-3)
A 		6.4
(1.3)
A 		0.6
(-2.9)
A 		8.8
(3)
A 		1.8
(-2.1)
A 		4.9
(0.2)
A 		8
avr 2.6
(-0.9) 		2.9
(-0.4) 		3.8
(1.1) 		4.9
(3) 		1.4
(-3) 		2.3
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15448
Sequence Type Exemplar sequence
Representative Public ID T01G6.3 NCBI
Target Description T01G6.3 /REP_DB=WormBase Gene ID /WP=CE25096 /GEN=str-196 /TR=Q9GUD1 /GB=AAG24184.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070819 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-196) (str-196) mRNA, complete cds. 11/11 None
SNAP00000004000 ENSEMBL cdna:SNAP chromosome:CEL140:V:492117:493470:1 11/11 None
GENEFINDER00000004012 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:491996:493612:1 11/11 None
T01G6.3 ENSEMBL cdna:known chromosome:CEL140:V:491561:493470:1 gene:T01G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:491560-493470(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-196
Ensembl T01G6.3
Entrez Gene 192027 Entrez gene
SwissProt Q9GUD1 EMBL-EBI
WormBase CE25096 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24184 Seven tm receptor protein 196 [Caenorhabditis elegans] ref|NP_503220.1| Seven TM Receptor family member (str-196) [Caenorhabditis elegans] 0.0
blast T32194 hypothetical protein T01G6.3 - Caenorhabditis elegans 0.0
blast T32194 hypothetical protein T01G6.3 - Caenorhabditis elegans 1.0E-173
blast AAG24184 Seven tm receptor protein 196 [Caenorhabditis elegans] ref|NP_503220.1| Seven TM Receptor family member (str-196) [Caenorhabditis elegans] 1.0E-158
blast AAG24184 Seven tm receptor protein 196 [Caenorhabditis elegans] ref|NP_503220.1| Seven TM Receptor family member (str-196) [Caenorhabditis elegans] 1.0E-143
blast T32194 hypothetical protein T01G6.3 - Caenorhabditis elegans 1.0E-142
blast CAE72264 Hypothetical protein CBG19383 [Caenorhabditis briggsae] 8.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.7E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.7E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.7E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503220.1 7 27-49,56-78,93-115,135-157,211-233,254-276,291-313
T01G6.3 7 27-49,56-78,93-115,135-157,211-233,254-276,291-313
SNAP00000004000 4 29-51,105-127,148-170,185-207
GENEFINDER00000004012 5 10-34,54-76,130-152,173-195,210-232
Sequence
Target Sequence 
>C. ELEGANS:191266_AT
tacatggcggaaactttcggcttgaatatcgatgaatgtacctattttgggctccttttc
tggaaagatgatggaattggaaatttgaagatcggctcattatcattcaatggcgtggta
aacatggatcttattttgggtacttcattcggctgcgttgcctactttggaattaattgc
taccggttaatctctcaaaagctcagcacaacagaatccctatcacaagcaacaaaaaat
ctacagcttcaattattctacgccttgatcgttcaatcagctattccatgcatgttcatg
tacatccctgctgcaataatttttacatttcccatgatcaacattgatcttgattcaaag
tatccatttgtatcagtaacaattgccttgtacactgcaattgacccacttccaacaatt
tttattatcaaagactatagaagagcctttttcagatttttatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATGGCGGAAACTTTCGGCTTGA 51 645 520 Antisense
TGAATGTACCTATTTTGGGCTCCTT 419 575 552 Antisense
GAAGATCGGCTCATTATCATTCAAT 196 339 606 Antisense
TATTTTGGGTACTTCATTCGGCTGC 490 659 651 Antisense
AATTGCTACCGGTTAATCTCTCAAA 498 177 694 Antisense
TCAGCACAACAGAATCCCTATCACA 5 625 722 Antisense
TCTACGCCTTGATCGTTCAATCAGC 160 615 776 Antisense
AATCAGCTATTCCATGCATGTTCAT 126 171 794 Antisense
TTCATGTACATCCCTGCTGCAATAA 270 689 814 Antisense
GCCTTGTACACTGCAATTGACCCAC 695 279 904 Antisense
AGAGCCTTTTTCAGATTTTTATCGT 382 69 961 Antisense
Sequence Source Affymetrix Proprietary Database