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[191264_at]

Description ZK792.1 /REP_DB=WormBase Gene ID /WP=CE24739 /CHR=4 /FEA=Sanger Annotation /DEF=Histidine acid phosphatases (HINXTON) TR:Q23596 protein_id:CAA92644.2
Cluster 6grp_total > 30      4grp_total > 38      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 156
(3)
M 		55.4
(-1.4)
A 		18.3
(-3)
A 		114
(1.2)
A 		138
B 152.1
(3)
P 		122
(1.6)
A 		22.5
(-3)
A 		97.6
(0.5)
A 		130
C 184.9
(3)
P 		113.3
(-0.4)
A 		57.1
(-3)
A 		76.5
(-2.1)
A 		128
avr 164.3
(3) 		96.9
(-0.1) 		32.6
(-3) 		96
(-0.1) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 119.7
(1.5)
A 		129.7
(3)
P 		108.9
(-0.1)
A 		114.6
(0.7)
A 		89.5
(-3)
A 		111.2
(0.2)
A 		40
B 124.5
(0.4)
P 		171
(3)
A 		89.9
(-1.6)
A 		121.4
(0.2)
A 		89.5
(-1.6)
A 		65.4
(-3)
A 		106
C 90.9
(-0.4)
A 		142.6
(2.8)
A 		120.3
(1.4)
A 		145.4
(3)
A 		50.5
(-3)
A 		68.2
(-1.9)
A 		95
avr 111.7
(-0) 		147.8
(3) 		106.4
(-0.5) 		127.1
(1.3) 		76.5
(-3) 		81.6
(-2.6) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 56.8
(3)
M 		12
(-2.2)
A 		4.8
(-3)
A 		16.7
(-1.6)
A 		52
B 48.5
(3)
P 		30.1
(0.5)
A 		5.2
(-3)
A 		20.8
(-0.8)
A 		43
C 61.2
(3)
P 		32.6
(-0.6)
A 		19.9
(-2.1)
A 		12.9
(-3)
A 		48
avr 55.5
(3) 		24.9
(-1) 		10
(-3) 		16.8
(-2.1) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 22.1
(-3)
A 		46.1
(3)
P 		23.7
(-2.6)
A 		29.1
(-1.3)
A 		27
(-1.8)
A 		27.1
(-1.8)
A 		24
B 43.3
(0.7)
P 		56.9
(3)
A 		21.8
(-3)
A 		32.2
(-1.2)
A 		36.3
(-0.5)
A 		24.4
(-2.6)
A 		35
C 33.7
(0.8)
A 		43.5
(3)
A 		30.6
(0.2)
A 		29.2
(-0.2)
A 		16.3
(-3)
A 		22.8
(-1.6)
A 		27
avr 33
(-1) 		48.8
(3) 		25.4
(-2.9) 		30.2
(-1.7) 		26.5
(-2.6) 		24.8
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8681
Sequence Type Exemplar sequence
Representative Public ID ZK792.1 NCBI
Target Description ZK792.1 /REP_DB=WormBase Gene ID /WP=CE24739 /CHR=4 /FEA=Sanger Annotation /DEF=Histidine acid phosphatases (HINXTON) TR:Q23596 protein_id:CAA92644.2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069805 NCBI Caenorhabditis elegans ZK792.1a (ZK792.1) mRNA, complete cds. 11/11 A 
SNAP00000023869 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11666252:11671371:1 9/11 None
GENEFINDER00000023879 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11666302:11675428:1 11/11 None
ZK792.1a ENSEMBL cdna:known chromosome:CEL140:IV:11659883:11667959:1 gene:ZK792.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178100 2 1 NM_069805 191264_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11662168-11667868(+) 99.55 99.59
Public Domain and Genome References
Ensembl ZK792.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92644 Hypothetical protein ZK792.1a [Caenorhabditis elegans] emb|CAA92636.2| Hypothetical protein ZK792.1a [Caenorhabditis elegans] ref|NP_502206.1| ZK792.1a [Caenorhabditis elegans] 0.0
blast CAC42387 Hypothetical protein ZK792.1b [Caenorhabditis elegans] ref|NP_502207.1| ZK792.1b [Caenorhabditis elegans] 0.0
blast CAE62076 Hypothetical protein CBG06099 [Caenorhabditis briggsae] 0.0
blast CAB54515 Hypothetical protein ZK792.8 [Caenorhabditis elegans] ref|NP_502208.1| ZK792.8 [Caenorhabditis elegans] 0.0
blast T27993 hypothetical protein ZK792.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 7.1E-11
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502206.1 2 15-34,516-538
ZK792.1a 2 15-34,516-538
GENEFINDER00000023879 5 1086-1108,1165-1187,1248-1270,1277-1299,1335-1357
Sequence
Target Sequence 
>C. ELEGANS:191264_AT
gatcagttttgtacctcgttcatgtattttggagatgttcttgaatatttcaacaaacaa
agtgcgaaaatgttcaatttgaatcttggagttgatagacaataccgtgtcctgaattca
tatccaattctgagagctctcggtttgatggctgaaggcaacgaaaaagaagttcaactt
ttctcgtctcatgacacaattattgggtcgattctccgaattatcacggactctgccatc
tacaatgattggcaattgcttgcggctcgggtcgtttttgaggtctatgaaacccccagc
aaaacgagattgctccgcgtgctccacaatggagtcgacataacgtctactgtgaagttc
tgtaaaagttttgaatatggactgtgcccattgtcaggtcttcaagaatttctgaaaatt
ggaatatttgaggtggccggattcaaaagcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGTTTTGTACCTCGTTCATGT 95 421 2422 Antisense
ATACCGTGTCCTGAATTCATATCCA 404 23 2523 Antisense
GCTCTCGGTTTGATGGCTGAAGGCA 487 287 2557 Antisense
TCAACTTTTCTCGTCTCATGACACA 297 631 2595 Antisense
GGGTCGATTCTCCGAATTATCACGG 145 495 2626 Antisense
CGGACTCTGCCATCTACAATGATTG 177 243 2648 Antisense
GGCTCGGGTCGTTTTTGAGGTCTAT 405 535 2685 Antisense
TGAGGTCTATGAAACCCCCAGCAAA 506 567 2700 Antisense
GCAAAACGAGATTGCTCCGCGTGCT 216 319 2720 Antisense
CTGTGCCCATTGTCAGGTCTTCAAG 277 239 2803 Antisense
GAGGTGGCCGGATTCAAAAGCTTCG 42 403 2851 Antisense
Sequence Source Affymetrix Proprietary Database