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[191260_at] 7TM chemoreceptor, srj family

Description F37B4.11 /REP_DB=WormBase Gene ID /WP=CE25874 /GEN=srj-54 /TR=Q9TXS5 /GB=AAK18951.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 56      4grp_total > 35      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 21.3
(-0.4)
A 		32.1
(3)
A 		12.8
(-3)
A 		23.7
(0.4)
A 		19
B 3.1
(-3)
A 		47.7
(3)
A 		19.7
(-0.8)
A 		12.5
(-1.7)
A 		45
C 34.9
(3)
A 		23.7
(0.1)
A 		11.7
(-3)
A 		32.3
(2.3)
A 		23
avr 19.8
(-1.5) 		34.5
(3) 		14.7
(-3) 		22.8
(-0.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 37.3
(1.5)
A 		1.7
(-3)
A 		34.1
(1.1)
A 		4.2
(-2.7)
A 		38.3
(1.6)
A 		49.2
(3)
A 		48
B 4.3
(-3)
A 		30.9
(3)
A 		14.5
(-0.7)
A 		17.4
(-0)
A 		4.5
(-3)
A 		12.4
(-1.2)
A 		27
C 22.7
(1.1)
A 		22.5
(1.1)
A 		26.7
(1.9)
A 		3.5
(-2.7)
A 		1.9
(-3)
A 		32.3
(3)
A 		30
avr 21.4
(0.4) 		18.4
(-0.4) 		25.1
(1.4) 		8.4
(-3) 		14.9
(-1.3) 		31.3
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.8
(3)
A 		7
(1.9)
A 		3.4
(-3)
A 		3.5
(-2.9)
A 		4
B 1
(-3)
A 		11.8
(3)
A 		4.6
(-1)
A 		2.7
(-2.1)
A 		11
C 11.6
(3)
A 		6.8
(-0.8)
A 		4.1
(-3)
A 		5.5
(-1.9)
A 		8
avr 6.8
(0.8) 		8.5
(3) 		4
(-2.9) 		3.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.9
(0.3)
A 		0.6
(-3)
A 		7.4
(0.6)
A 		1.1
(-2.7)
A 		11.6
(2.8)
A 		12
(3)
A 		11
B 1.5
(-3)
A 		10.3
(3)
A 		3.5
(-1.6)
A 		4.6
(-0.9)
A 		1.8
(-2.8)
A 		4.6
(-0.9)
A 		9
C 8.4
(1.6)
A 		6.9
(0.7)
A 		6.8
(0.6)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		10.8
(3)
A 		10
avr 5.6
(-0) 		5.9
(0.3) 		5.9
(0.3) 		2.1
(-3) 		4.7
(-0.8) 		9.1
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14855
Sequence Type Exemplar sequence
Representative Public ID F37B4.11 NCBI
Target Description F37B4.11 /REP_DB=WormBase Gene ID /WP=CE25874 /GEN=srj-54 /TR=Q9TXS5 /GB=AAK18951.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071373 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-54) (srj-54) mRNA, complete cds. 11/11 None
SNAP00000026927 ENSEMBL cdna:SNAP chromosome:CEL140:V:2858487:2859343:-1 11/11 None
F37B4.11 ENSEMBL cdna:known chromosome:CEL140:V:2858487:2859665:-1 gene:F37B4.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026936 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2858486-2859665(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-54
Ensembl F37B4.11
Entrez Gene 191953 Entrez gene
SwissProt Q9TXS5 EMBL-EBI
WormBase CE25874 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 0.0
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 1.0E-145
blast NP_503773 Serpentine Receptor, class J family member (srj-55) [Caenorhabditis elegans] gb|AAF60573.2| Serpentine receptor, class j protein 55 [Caenorhabditis elegans] 1.0E-136
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 1.0E-132
blast G88979 protein F37B4.5 [imported] - Caenorhabditis elegans 1.0E-101
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 2.0E-99
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503774.1 7 7-29,42-61,95-117,129-148,196-218,246-268,283-305
F37B4.11 7 7-29,42-61,95-117,129-148,196-218,246-268,283-305
SNAP00000026927 5 5-27,39-58,106-128,156-178,193-215
Sequence
Target Sequence 
>C. ELEGANS:191260_AT
agcctagccacacataagtttcactggtatttaacaatatcggcaatcatttttgtttta
tattttgtggcgtggtacgttatttgctacttcccagcccgtgcgaatgtggaaattaga
gagtacattcgcaaagaatattctgaagtttatggaaccgattcaatggattacgatatg
ctacgagcattgtttcacgaaggatcttacgaaactgttgtccggtcttggatatacatt
atgttattgacagcaatgtcagtggcttctattgtagcatttttagttatggctagaatg
attatgtacaagctgaataagatgtccgtaaatgttagcaaaaagacttccaaatttcag
tttgagcttcttcgagcgttggttgttcaaaccgtcgttccaattttcatcagtttcttc
ccatgccttctttgttggtacagtccaatgttcggaattcagttgtcaagaggattcaac
tacttcgaagtcagtgctcttggagtattcgcgtttgtcgatccggtagcgataattctg
tgtctgccagtattccgagaaagaattttacgatttcccaaacctgtggttggcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCTAGCCACACATAAGTTTCACT 70 85 373 Antisense
TGGTACGTTATTTGCTACTTCCCAG 512 551 445 Antisense
TACGAAACTGTTGTCCGGTCTTGGA 482 627 580 Antisense
GACAGCAATGTCAGTGGCTTCTATT 591 367 621 Antisense
GAGCTTCTTCGAGCGTTGGTTGTTC 170 385 736 Antisense
TCAAACCGTCGTTCCAATTTTCATC 68 629 759 Antisense
TTCCCATGCCTTCTTTGTTGGTACA 589 697 790 Antisense
GTCAGTGCTCTTGGAGTATTCGCGT 256 467 862 Antisense
TATTCGCGTTTGTCGATCCGGTAGC 238 665 878 Antisense
GGTAGCGATAATTCTGTGTCTGCCA 394 505 897 Antisense
GATTTCCCAAACCTGTGGTTGGCGT 90 427 944 Antisense
Sequence Source Affymetrix Proprietary Database