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[191258_at] 7TM chemoreceptor, str family

Description F37B4.12 /REP_DB=WormBase Gene ID /WP=CE17800 /GEN=str-39 /TR=Q9TXS6 /GB=AAK18945.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 53      4grp_total > 32      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 27
(-3)
A 		47.2
(-0.7)
A 		79.2
(3)
A 		32.2
(-2.4)
A 		52
B 39.7
(-2.8)
A 		39.2
(-3)
A 		55.7
(2.4)
A 		57.4
(3)
A 		18
C 46.5
(-2.9)
A 		45.8
(-3)
A 		71
(0.5)
A 		89.3
(3)
A 		44
avr 37.7
(-3) 		44.1
(-1.8) 		68.6
(3) 		59.6
(1.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 24.9
(-3)
A 		36
(-2)
A 		94.3
(3)
A 		55.5
(-0.4)
A 		55.7
(-0.3)
A 		68.4
(0.8)
A 		69
B 53.1
(1.3)
A 		38.8
(-1.3)
A 		29.6
(-3)
A 		62.4
(3)
A 		40.6
(-1)
A 		46.6
(0.1)
A 		33
C 39.3
(1.2)
A 		53.3
(3)
A 		36.2
(0.8)
A 		10.5
(-2.5)
A 		46.3
(2.1)
A 		6.2
(-3)
A 		47
avr 39.1
(-3) 		42.7
(-1.5) 		53.4
(3) 		42.8
(-1.4) 		47.5
(0.5) 		40.4
(-2.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.8
(-1.1)
A 		10.2
(-0.9)
A 		20.7
(3)
A 		4.7
(-3)
A 		16
B 12.7
(2.6)
A 		9.7
(-3)
A 		12.9
(3)
A 		12.2
(1.7)
A 		3
C 15.4
(-1.9)
A 		13.2
(-3)
A 		24.7
(3)
A 		15.1
(-2)
A 		12
avr 12.6
(-1.7) 		11
(-2.8) 		19.4
(3) 		10.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.6
(-3)
A 		12.8
(0.1)
A 		20.5
(3)
A 		14.1
(0.6)
A 		16.8
(1.6)
A 		16.6
(1.5)
A 		16
B 18.5
(3)
A 		12.9
(0)
A 		7.2
(-3)
A 		16.5
(1.9)
A 		16.5
(1.9)
A 		17.4
(2.4)
A 		11
C 14.6
(2.3)
A 		16.3
(3)
A 		9.2
(0)
A 		2.1
(-3)
A 		15
(2.5)
A 		2.1
(-3)
A 		14
avr 12.6
(-1) 		14
(0.6) 		12.3
(-1.4) 		10.9
(-3) 		16.1
(3) 		12
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14816
Sequence Type Exemplar sequence
Representative Public ID F37B4.12 NCBI
Target Description F37B4.12 /REP_DB=WormBase Gene ID /WP=CE17800 /GEN=str-39 /TR=Q9TXS6 /GB=AAK18945.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071381 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-39) (str-39) mRNA, complete cds. 11/11 None
SNAP00000026932 ENSEMBL cdna:SNAP chromosome:CEL140:V:2875634:2879323:-1 10/11 None
F37B4.12 ENSEMBL cdna:known chromosome:CEL140:V:2877631:2879728:-1 gene:F37B4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026938 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2877630-2879728(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-39
Ensembl F37B4.12
Entrez Gene 191975 Entrez gene
SwissProt Q9TXS6 EMBL-EBI
WormBase CE17800 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18945 Seven tm receptor protein 39 [Caenorhabditis elegans] ref|NP_503782.1| Seven TM Receptor family member (str-39) [Caenorhabditis elegans] 1.0E-180
blast AAK18944 Hypothetical protein F37B4.10 [Caenorhabditis elegans] ref|NP_503781.1| F37B4.10 [Caenorhabditis elegans] 1.0E-152
blast NP_504899 Seven TM Receptor family member (str-41) [Caenorhabditis elegans] gb|AAK72297.2| Seven tm receptor protein 41 [Caenorhabditis elegans] 1.0E-92
blast AAK18945 Seven tm receptor protein 39 [Caenorhabditis elegans] ref|NP_503782.1| Seven TM Receptor family member (str-39) [Caenorhabditis elegans] 7.0E-90
blast CAE62383 Hypothetical protein CBG06469 [Caenorhabditis briggsae] 2.0E-84
blast NP_504899 Seven TM Receptor family member (str-41) [Caenorhabditis elegans] gb|AAK72297.2| Seven tm receptor protein 41 [Caenorhabditis elegans] 2.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503782.1 7 5-27,42-59,90-112,132-154,197-219,246-268,280-302
F37B4.12 7 5-27,42-59,90-112,132-154,197-219,246-268,280-302
SNAP00000026932 3 62-84,112-134,144-166
Sequence
Target Sequence 
>C. ELEGANS:191258_AT
gtatccggttttcatcgggtctgtgaacggagcagcgatctggtgtttgacacgacccga
tgaattttcagatgattatatgagaaatgaaatatttgaagtatacgaattagatatttc
taccctcccacgactactcatagttccttatgatcaaaatggcaacgtaagaatcaataa
tgtgctatacctttgcattggaacatttctactctcttctcaatacctaataattgtgta
ttgcgggcttcaaatgcattttcaaatgcagaaagagctgcaaaagttttctgtcgccaa
tcgaaaacttcaacagcaatttttcaaggcgttggttgttcaagttacggtcccgaccat
aactttcgttttgccagcaatgccacttttgctaggcccgttgtttgatttgaagatgtc
tttcaaatctggagttatttgtgcattattggggatctacccatttatcgatagtatact
gtttatgttaattgtaactgagtacagaaaacatctggctacactttgcaattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCCGGTTTTCATCGGGTCTGTG 468 453 420 Antisense
GATCTGGTGTTTGACACGACCCGAT 337 419 456 Antisense
GAATTAGATATTTCTACCCTCCCAC 579 323 526 Antisense
TCCCACGACTACTCATAGTTCCTTA 580 597 545 Antisense
ATTGGAACATTTCTACTCTCTTCTC 617 3 616 Antisense
TGCAAAAGTTTTCTGTCGCCAATCG 210 571 698 Antisense
TGTTCAAGTTACGGTCCCGACCATA 507 561 756 Antisense
GACCATAACTTTCGTTTTGCCAGCA 660 383 774 Antisense
TTGCTAGGCCCGTTGTTTGATTTGA 97 699 808 Antisense
GGGGATCTACCCATTTATCGATAGT 471 497 870 Antisense
ACATCTGGCTACACTTTGCAATTGC 99 105 930 Antisense
Sequence Source Affymetrix Proprietary Database