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[191256_at] 7TM chemoreceptor, srh family

Description D1065.5 /REP_DB=WormBase Gene ID /WP=CE09055 /GEN=srh-211 /TR=O16197 /GB=AAG24022.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 59      4grp_total > 18      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 10.5
(-2.9)
A 		48.1
(-0.8)
A 		9.4
(-3)
A 		112.6
(3)
A 		103
B 9.8
(-3)
A 		36.7
(0.7)
A 		11.4
(-2.8)
A 		53.4
(3)
A 		44
C 27.3
(-1.5)
A 		13.4
(-2.6)
A 		9.2
(-3)
A 		79.9
(3)
A 		71
avr 15.9
(-2.5) 		32.7
(-1.1) 		10
(-3) 		82
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.7
(3)
A 		18.6
(-3)
A 		44.4
(2.1)
A 		25.1
(-1.7)
A 		28.5
(-1)
A 		25
(-1.7)
A 		30
B 50.2
(2.4)
A 		7.4
(-3)
A 		28.8
(-0.3)
A 		27.6
(-0.4)
A 		42.6
(1.5)
A 		54.8
(3)
A 		47
C 8.7
(-3)
A 		12.4
(-2.4)
A 		10.4
(-2.7)
A 		45
(3)
A 		20.1
(-1.1)
A 		45.3
(3)
A 		37
avr 35.9
(1.8) 		12.8
(-3) 		27.9
(0.1) 		32.6
(1.1) 		30.4
(0.7) 		41.7
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.8
(-2.4)
A 		10.4
(0.4)
A 		2.4
(-3)
A 		16.5
(3)
A 		14
B 3.1
(-2.7)
A 		9.1
(1.4)
A 		2.7
(-3)
A 		11.4
(3)
A 		9
C 9
(0.4)
A 		3.9
(-2.6)
A 		3.2
(-3)
A 		13.5
(3)
A 		10
avr 5.3
(-1.6) 		7.8
(-0.3) 		2.8
(-3) 		13.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9
(1.8)
A 		6.6
(-2.2)
A 		9.7
(3)
A 		6.4
(-2.5)
A 		8.6
(1.2)
A 		6.1
(-3)
A 		4
B 17.5
(2)
A 		2.5
(-3)
A 		7
(-1.5)
A 		7.3
(-1.4)
A 		17.3
(2)
A 		20.4
(3)
A 		18
C 3.2
(-2.8)
A 		3.8
(-2.5)
A 		2.7
(-3)
A 		9.1
(0.1)
A 		6.5
(-1.2)
A 		15.2
(3)
A 		13
avr 9.9
(0.5) 		4.3
(-3) 		6.5
(-1.6) 		7.6
(-0.9) 		10.8
(1.1) 		13.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15001
Sequence Type Exemplar sequence
Representative Public ID D1065.5 NCBI
Target Description D1065.5 /REP_DB=WormBase Gene ID /WP=CE09055 /GEN=srh-211 /TR=O16197 /GB=AAG24022.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071736 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-211) (srh-211) mRNA, complete cds. 11/11 None
D1065.5 ENSEMBL cdna:known chromosome:CEL140:V:4077874:4079626:-1 gene:D1065.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024540 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4077873-4079626(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-211
Ensembl D1065.5
Entrez Gene 183922 Entrez gene
SwissProt O16197 EMBL-EBI
WormBase CE09055 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504137 Serpentine Receptor, class H family member (srh-211) [Caenorhabditis elegans] gb|AAG24022.1| Serpentine receptor, class h protein 211 [Caenorhabditis elegans] 1.0E-170
blast CAE65413 Hypothetical protein CBG10367 [Caenorhabditis briggsae] 1.0E-129
blast NP_001023748 Serpentine Receptor, class H family member (srh-210) [Caenorhabditis elegans] gb|AAW88405.1| Serpentine receptor, class h protein 210, isoform b [Caenorhabditis elegans] 3.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504137.1 8 15-37,58-80,95-117,137-156,171-193,200-219,239-261,273-295
D1065.5 8 15-37,58-80,95-117,137-156,171-193,200-219,239-261,273-295
Sequence
Target Sequence 
>C. ELEGANS:191256_AT
ggcgtcatcaacaaaccactggaaacgagtgcgacaagcgtcttttgtgattttatatat
tgttgctctaacttattttataccatttatttttcaagtcccagatccggaaatttctgt
tccagtcgtgctcatgcaacttccaactctgcgatgcttctacaaaggaccaatatttgt
cttcaccttggactccaccgttgtcgcaagaatcacaatgctaaagttaattatcgagtt
cagttacctcggtctactagtatacttgacatttcaaagtcttatcaagcaaacgaaaaa
cgctgtactctctcgtaacaccttggctctccagagaaaatttttcatttcaatcataac
acagacaattattccatttgcaattattattctcccaatttcatattgtgggtattcttt
atctcaagaatattataatcaaactttcaataatattgcatttattattatttcttctca
cggattgatatctactattgcgatactgctgattcatgaaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTCATCAACAAACCACTGGAAA 578 541 384 Antisense
GAGTGCGACAAGCGTCTTTTGTGAT 392 401 410 Antisense
TTTATTTTTCAAGTCCCAGATCCGG 311 675 469 Antisense
AAATTTCTGTTCCAGTCGTGCTCAT 69 117 494 Antisense
CTCATGCAACTTCCAACTCTGCGAT 465 229 514 Antisense
TTCCAACTCTGCGATGCTTCTACAA 708 699 524 Antisense
CTCCACCGTTGTCGCAAGAATCACA 123 237 576 Antisense
AGTTCAGTTACCTCGGTCTACTAGT 112 1 620 Antisense
GAAAAACGCTGTACTCTCTCGTAAC 158 355 678 Antisense
TAACACCTTGGCTCTCCAGAGAAAA 69 637 699 Antisense
GCGATACTGCTGATTCATGAACCGT 661 289 883 Antisense
Sequence Source Affymetrix Proprietary Database