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[191255_s_at]

Description F07A5.1B /REP_DB=WormBase Gene ID /WP=CE17632 /GEN=inx-14 /TR=SW:O62136 /GB=CAA96621.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ogre family
Cluster 6grp_total > 97      4grp_total > 09      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 44
(-3)
A 		72.6
(-1.9)
P 		90
(-1.3)
P 		204.3
(3)
P 		160
B 88.7
(0.6)
A 		68.3
(-3)
A 		88.6
(0.6)
P 		102.1
(3)
P 		34
C 59.6
(-3)
A 		112.8
(-0.1)
A 		72.1
(-2.3)
P 		169.6
(3)
P 		110
avr 64.1
(-3) 		84.6
(-1.7) 		83.6
(-1.8) 		158.7
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 26.7
(-3)
A 		79.8
(-2.4)
P 		123.6
(-2)
P 		172.1
(-1.5)
P 		328.3
(0.1)
P 		603.8
(3)
P 		577
B 84.2
(-2.5)
A 		45.5
(-3)
A 		97.8
(-2.3)
P 		177.5
(-1.2)
P 		334
(0.9)
P 		494.7
(3)
P 		449
C 54
(-2.6)
A 		19.4
(-3)
A 		122.9
(-1.7)
P 		197.4
(-0.7)
P 		371.9
(1.6)
P 		481.1
(3)
P 		462
avr 55
(-2.9) 		48.2
(-3) 		114.8
(-2.2) 		182.3
(-1.3) 		344.7
(0.7) 		526.5
(3) 		478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16
(-2.9)
A 		15.8
(-3)
P 		23.5
(0.3)
P 		29.9
(3)
P 		14
B 28.3
(3)
A 		16.9
(-3)
A 		20.5
(-1.1)
P 		21.8
(-0.4)
P 		11
C 19.7
(-3)
A 		32.4
(3)
A 		25.1
(-0.4)
P 		28.6
(1.2)
P 		13
avr 21.3
(-3) 		21.7
(-2.6) 		23
(-1.1) 		26.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 4.9
(-3)
A 		28.4
(-2)
P 		26.9
(-2.1)
P 		43.7
(-1.4)
P 		99.1
(1)
P 		147
(3)
P 		142
B 29.3
(-2.5)
A 		15.1
(-3)
A 		23.8
(-2.7)
P 		47
(-1.9)
P 		135.7
(1.3)
P 		184.5
(3)
P 		169
C 20
(-2.5)
A 		5.9
(-3)
A 		31.3
(-2)
P 		39.7
(-1.7)
P 		120.3
(1.4)
P 		161.1
(3)
P 		155
avr 18.1
(-2.9) 		16.5
(-3) 		27.3
(-2.6) 		43.5
(-1.9) 		118.4
(1.1) 		164.2
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191255_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2032
Sequence Type Exemplar sequence
Representative Public ID F07A5.1B NCBI
Target Description F07A5.1B /REP_DB=WormBase Gene ID /WP=CE17632 /GEN=inx-14 /TR=SW:O62136 /GB=CAA96621.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ogre family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059677(11), NM_059678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059677 NCBI Caenorhabditis elegans INneXin family member (inx-14) (inx-14) mRNA, complete cds. 11/11 None
NM_059678 NCBI Caenorhabditis elegans INneXin family member (inx-14) (inx-14) mRNA, complete cds. 11/11 None
SNAP00000034781 ENSEMBL cdna:SNAP chromosome:CEL140:I:7358604:7360203:-1 11/11 None
GENEFINDER00000034793 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7358604:7360203:-1 11/11 None
F07A5.1b ENSEMBL cdna:known chromosome:CEL140:I:7358459:7360322:-1 gene:F07A5.1 11/11 None
F07A5.1a ENSEMBL cdna:known chromosome:CEL140:I:7358508:7360203:-1 gene:F07A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7358534-7360134(-) 100.0 100.0
Public Domain and Genome References
Ensembl F07A5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96621 Hypothetical protein F07A5.1b [Caenorhabditis elegans] ref|NP_492078.1| INneXin family member (inx-14) [Caenorhabditis elegans] sp|O62136|INX14_CAEEL Innexin-14 0.0
blast CAA96618 Hypothetical protein F07A5.1a [Caenorhabditis elegans] ref|NP_492079.1| INneXin family member (inx-14) [Caenorhabditis elegans] 0.0
blast CAE66595 Hypothetical protein CBG11919 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492078.1 4 28-45,104-126,179-198,303-325
NP_492079.1 4 28-45,104-126,179-198,303-325
F07A5.1b 4 28-45,104-126,179-198,303-325
F07A5.1a 4 28-45,104-126,179-198,303-325
SNAP00000034781 4 28-45,104-126,179-198,303-325
GENEFINDER00000034793 4 28-45,104-126,179-198,303-325
Sequence
Target Sequence 
>C. ELEGANS:191255_S_AT
tctcctcgttttccgacaaacaaagattcgcggcaattctcacagacggcagttacaatc
gtttccagtacttcccaattcttgtgggatgtgaatatcagttgcaagaatcagttagca
actttgtgaatcataaagctcaatgcattattccgatgaatgtgattaacgagaaaattt
tcattgggctttacttttggcttcttgtgctcaccgcgctctcggtaattggaactgtta
agtggattcttcgtatcaaaagtaagaagctcaacgaggtgatgatctacaaattgatca
aaaaatcattggaacgagagccattcgacagtaatattcatgatcaccgctacaactttg
ttcacaagtacctgtgtgccgacggaattcttttaatttatttcatgatggatacgaatg
gatttttgaaaactgaagaagtcatcggtgctcttttcaagaaatattgctcagacgctg
gccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCTCGTTTTCCGACAAACAAAG 13 609 737 Antisense
AAAGATTCGCGGCAATTCTCACAGA 193 123 758 Antisense
GACGGCAGTTACAATCGTTTCCAGT 246 377 781 Antisense
TTCCAGTACTTCCCAATTCTTGTGG 250 699 799 Antisense
AAAGCTCAATGCATTATTCCGATGA 103 125 871 Antisense
TTTACTTTTGGCTTCTTGTGCTCAC 427 673 926 Antisense
CCGCGCTCTCGGTAATTGGAACTGT 220 257 950 Antisense
GAGAGCCATTCGACAGTAATATTCA 623 393 1052 Antisense
CATGATCACCGCTACAACTTTGTTC 318 209 1075 Antisense
AAGTACCTGTGTGCCGACGGAATTC 335 155 1102 Antisense
AAATATTGCTCAGACGCTGGCCTTG 213 115 1198 Antisense
Sequence Source Affymetrix Proprietary Database