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[191254_at] 7TM chemoreceptor, srh family

Description C04F2.4 /REP_DB=WormBase Gene ID /WP=CE17368 /GEN=srh-229 /TR=O76662 /GB=AAC26912.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 43      4grp_total > 32      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 47.8
(0.1)
A 		14.3
(-3)
A 		80
(3)
A 		58.3
(1)
A 		66
B 65.1
(3)
A 		43.8
(0.6)
A 		42.6
(0.4)
A 		12.9
(-3)
A 		52
C 21
(-3)
A 		43.7
(-0.5)
A 		50.8
(0.3)
A 		75.6
(3)
P 		55
avr 44.6
(-0.3) 		33.9
(-3) 		57.8
(3) 		48.9
(0.8) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 15.7
(-2.2)
A 		6.5
(-3)
A 		75.6
(3)
M 		32.1
(-0.8)
A 		26.5
(-1.3)
A 		19.8
(-1.8)
A 		69
B 57.7
(3)
A 		47.1
(1)
A 		44.4
(0.5)
M 		25.4
(-3)
A 		41.3
(-0)
A 		33.9
(-1.4)
A 		32
C 49.7
(3)
A 		36.9
(1.2)
A 		43.5
(2.1)
A 		31
(0.3)
A 		8
(-3)
A 		33.3
(0.6)
A 		42
avr 41
(0.2) 		30.2
(-2) 		54.5
(3) 		29.5
(-2.1) 		25.3
(-3) 		29
(-2.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.4
(1.8)
A 		3.1
(-3)
A 		20.9
(3)
A 		8.5
(-1.2)
A 		18
B 20.7
(3)
A 		10.8
(-0.3)
A 		9.9
(-0.6)
A 		2.8
(-3)
A 		18
C 6.9
(-3)
A 		12.6
(0.2)
A 		17.7
(3)
A 		12.8
(0.3)
P 		11
avr 15
(2.1) 		8.8
(-2.4) 		16.2
(3) 		8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		2.3
(-3)
A 		16.5
(3)
M 		8.1
(-0.5)
A 		8
(-0.6)
A 		4.8
(-1.9)
A 		14
B 20.1
(3)
A 		15.7
(1)
A 		10.8
(-1.2)
M 		6.7
(-3)
A 		16.8
(1.5)
A 		12.6
(-0.4)
A 		13
C 18.4
(3)
A 		11.2
(0.3)
A 		11.1
(0.2)
A 		6.2
(-1.6)
A 		2.6
(-3)
A 		11.1
(0.2)
A 		16
avr 13.8
(3) 		9.7
(-0.6) 		12.8
(2.1) 		7
(-3) 		9.1
(-1.1) 		9.5
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11765
Sequence Type Exemplar sequence
Representative Public ID C04F2.4 NCBI
Target Description C04F2.4 /REP_DB=WormBase Gene ID /WP=CE17368 /GEN=srh-229 /TR=O76662 /GB=AAC26912.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072530 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-229) (srh-229) mRNA, complete cds. 11/11 None
C04F2.4 ENSEMBL cdna:known chromosome:CEL140:V:7505432:7506963:-1 gene:C04F2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7505432-7506964(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-229
Ensembl C04F2.4
Entrez Gene 191888 Entrez gene
SwissProt O76662 EMBL-EBI
WormBase CE17368 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26912 Serpentine receptor, class h protein 229 [Caenorhabditis elegans] ref|NP_504931.1| Serpentine Receptor, class H family member (srh-229) [Caenorhabditis elegans] 1.0E-180
blast CAE57782 Hypothetical protein CBG00804 [Caenorhabditis briggsae] 1.0E-76
blast CAE64160 Hypothetical protein CBG08780 [Caenorhabditis briggsae] 5.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504931.1 7 20-42,55-77,92-114,135-157,194-216,242-264,274-296
C04F2.4 7 20-42,55-77,92-114,135-157,194-216,242-264,274-296
Sequence
Target Sequence 
>C. ELEGANS:191254_AT
tctgctgtcttatacgtatgtcccatattcctaaatgcccccgatcaggaacgcgctgtc
ggtaaagtttctgaaattttgaactgcaccgctgagccctacatagatgaccgacgactt
ttcgtggcaggtcttgacttcaaaattccatttgtttgtattatgtttgaatctttactg
gttgcaattgaaggtttcactttcctgattttggtcgtcaagaaattgatgagtacaacc
caaacatctacattatcaatacgaacccaatctctacaaaagaaattagtgaaagcagtt
gtacttcaatctattgtacctattgtggtgatagccatacctgttttcggagagatgata
tctactatttttgactatagaaaccagaatttgaccaatttatgtgttataataggctcg
tctcatggagtactttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCTGTCTTATACGTATGTCCCA 163 609 442 Antisense
TATGTCCCATATTCCTAAATGCCCC 252 655 458 Antisense
GGAACGCGCTGTCGGTAAAGTTTCT 209 531 489 Antisense
AAATTTTGAACTGCACCGCTGAGCC 422 115 515 Antisense
GCTGAGCCCTACATAGATGACCGAC 480 295 532 Antisense
GACCGACGACTTTTCGTGGCAGGTC 326 371 550 Antisense
GAAGGTTTCACTTTCCTGATTTTGG 699 333 631 Antisense
TACAACCCAAACATCTACATTATCA 597 641 675 Antisense
ATCAATACGAACCCAATCTCTACAA 64 27 696 Antisense
GTGATAGCCATACCTGTTTTCGGAG 350 485 769 Antisense
AGGCTCGTCTCATGGAGTACTTTCT 480 53 855 Antisense
Sequence Source Affymetrix Proprietary Database