[Home] | [Total List]

[191251_at] UDP-glucuronysltransferase

Description C33A12.6 /REP_DB=WormBase Gene ID /WP=CE05352 /TR=Q18361 /GB=CAA92791.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_high_8_8 > 54      6grp_highest_nonorm > 81      6grp_total > 51      4grp_total > 57      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 763
1 2 3 4 range
A 264.9
(-2.1)
P 		782
(2.6)
P 		826.1
(3)
P 		162.7
(-3)
P 		663
B 273.7
(-1.5)
P 		696.1
(2.1)
P 		806.2
(3)
P 		99.3
(-3)
A 		707
C 270.5
(-2.1)
P 		818.4
(2.6)
P 		862.2
(3)
P 		164.6
(-3)
P 		698
avr 269.7
(-1.9) 		765.5
(2.4) 		831.5
(3) 		142.2
(-3) 		689

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 280.7
(-1)
P 		217.9
(-2.8)
P 		418.6
(3)
P 		367.5
(1.5)
P 		217.4
(-2.8)
P 		211
(-3)
P 		208
B 283.9
(-1.6)
P 		243.3
(-3)
P 		423.3
(3)
P 		356
(0.8)
P 		274.6
(-2)
P 		263.5
(-2.3)
P 		180
C 229.8
(-1.8)
P 		254.6
(-0.6)
P 		330.4
(3)
P 		324.4
(2.7)
P 		204
(-3)
P 		259.9
(-0.3)
P 		126
avr 264.8
(-1.8) 		238.6
(-2.8) 		390.8
(3) 		349.3
(1.4) 		232
(-3) 		244.8
(-2.5) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 96.5
(-0.7)
P 		169.7
(1.6)
P 		216
(3)
P 		23.8
(-3)
P 		192
B 87.3
(-0.6)
P 		171.9
(2.5)
P 		186.8
(3)
P 		21.2
(-3)
A 		166
C 89.5
(-1.6)
P 		235.3
(1.6)
P 		300.5
(3)
P 		27.8
(-3)
P 		273
avr 91.1
(-1.1) 		192.3
(1.8) 		234.4
(3) 		24.3
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 51.8
(-2.9)
P 		77.5
(0.7)
P 		91.2
(2.7)
P 		93.2
(3)
P 		65.6
(-1)
P 		51.4
(-3)
P 		42
B 98.8
(0.5)
P 		81
(-3)
P 		102.8
(1.3)
P 		94.3
(-0.4)
P 		111.6
(3)
P 		98.2
(0.4)
P 		31
C 85.2
(2.5)
P 		77.7
(0.4)
P 		84.1
(2.2)
P 		65.2
(-3)
P 		66
(-2.8)
P 		87
(3)
P 		22
avr 78.6
(-3) 		78.7
(-3) 		92.7
(3) 		84.2
(-0.6) 		81.1
(-1.9) 		78.9
(-2.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9264
Sequence Type Exemplar sequence
Representative Public ID C33A12.6 NCBI
Target Description C33A12.6 /REP_DB=WormBase Gene ID /WP=CE05352 /TR=Q18361 /GB=CAA92791.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069279 NCBI Caenorhabditis elegans C33A12.6 (UDP-glucuronysltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000009044 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9500303:9502343:1 9/11 None
C33A12.6 ENSEMBL cdna:known chromosome:CEL140:IV:9500303:9502482:1 gene:C33A12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009024 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9500308-9502488(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronysltransferase
Gene Symbol ugt-21
Ensembl C33A12.6
Entrez Gene 183141 Entrez gene
SwissProt Q18361 EMBL-EBI
WormBase CE05352 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92791 Hypothetical protein C33A12.6 [Caenorhabditis elegans] ref|NP_501680.1| C33A12.6 [Caenorhabditis elegans] 0.0
blast CAE74033 Hypothetical protein CBG21683 [Caenorhabditis briggsae] 0.0
blast CAE61607 Hypothetical protein CBG05526 [Caenorhabditis briggsae] 0.0
blast AAC68980 Udp-glucuronosyltransferase protein 20 [Caenorhabditis elegans] ref|NP_500913.1| K08B4.4 [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.4E-35
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.8E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501680.1 1 478-500
C33A12.6 1 478-500
Sequence
Target Sequence 
>C. ELEGANS:191251_AT
catctcggagattggcttcctcaaaatgaattactcgctgatccacgtctatcagtattt
gtcacgcatggaggtttaggatcagttactgaattagcgatgatgggaacacctgcagtt
atgattcctttgtttgctgatcaagggagaaatgcacaaatgctcaaacgtcatggtgga
gctgtagtaattgaaaaaaataatttagcagatactcatttcatgaaagaaacattagaa
aaggtcatcaaagatcccaaatatcttgagaattctaagagattagctgagatgctgact
aatcaaccaacgaatccaaaagagacactgattaaatacgtggaatttgcagcaagattt
ggaaaacttccttcattggacaactatggccgccatcaatcatatattgagtacttcttc
cttgatataattgcaatacttgctgtgatctcattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTCGGAGATTGGCTTCCTCAAA 544 211 1027 Antisense
AATGAATTACTCGCTGATCCACGTC 506 163 1051 Antisense
GATCCACGTCTATCAGTATTTGTCA 434 415 1066 Antisense
GTATTTGTCACGCATGGAGGTTTAG 71 451 1081 Antisense
TAGCGATGATGGGAACACCTGCAGT 502 651 1121 Antisense
ACACCTGCAGTTATGATTCCTTTGT 419 109 1135 Antisense
AACGTCATGGTGGAGCTGTAGTAAT 686 143 1193 Antisense
GCTGAGATGCTGACTAATCAACCAA 541 295 1312 Antisense
CATTGGACAACTATGGCCGCCATCA 581 215 1400 Antisense
ATCATATATTGAGTACTTCTTCCTT 276 31 1425 Antisense
GCAATACTTGCTGTGATCTCATTAT 77 321 1459 Antisense
Sequence Source Affymetrix Proprietary Database