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[191248_at] 7TM chemoreceptor, srh family

Description C10G11.2 /REP_DB=WormBase Gene ID /WP=CE20497 /GEN=srh-50 /TR=P91032 /GB=AAB42242.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 02      4grp_total > 27      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 33.7
(-2.8)
A 		71.4
(0.1)
A 		31.5
(-3)
A 		107.9
(3)
A 		76
B 19.3
(-1.3)
A 		44.2
(2.5)
A 		7.8
(-3)
A 		47.7
(3)
A 		40
C 31
(-1.3)
A 		52.2
(0)
A 		2.8
(-3)
A 		101.3
(3)
M 		99
avr 28
(-1.8) 		55.9
(0.5) 		14
(-3) 		85.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 30.2
(1.2)
A 		32.8
(1.6)
A 		41.8
(3)
A 		4.1
(-3)
A 		38.9
(2.5)
A 		13.8
(-1.5)
A 		38
B 30.6
(-0.1)
A 		53.5
(3)
A 		18
(-1.8)
A 		19.8
(-1.6)
A 		23.7
(-1.1)
A 		9.4
(-3)
A 		44
C 49.9
(1.7)
A 		62
(3)
A 		16.5
(-1.9)
A 		8.6
(-2.8)
A 		17.9
(-1.8)
A 		6.6
(-3)
A 		55
avr 36.9
(1.1) 		49.4
(3) 		25.4
(-0.6) 		10.8
(-2.9) 		26.8
(-0.4) 		9.9
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.3
(0.2)
A 		15.5
(2.8)
A 		8.2
(-3)
A 		15.8
(3)
A 		8
B 6.2
(-0.1)
A 		10.9
(3)
A 		1.8
(-3)
A 		10.2
(2.5)
A 		9
C 10.3
(0.5)
A 		15
(2.2)
A 		1
(-3)
A 		17.1
(3)
M 		16
avr 9.6
(0.3) 		13.8
(2.7) 		3.7
(-3) 		14.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.6
(-0.4)
A 		11.7
(3)
A 		9.1
(1.5)
A 		1
(-3)
A 		11.7
(3)
A 		3.4
(-1.7)
A 		11
B 10.7
(0)
A 		17.8
(3)
A 		4.4
(-2.6)
A 		5.3
(-2.2)
A 		9.6
(-0.4)
A 		3.5
(-3)
A 		14
C 18.5
(2.9)
A 		18.9
(3)
A 		4.2
(-2.1)
A 		1.7
(-3)
A 		5.8
(-1.6)
A 		2.2
(-2.8)
A 		17
avr 11.6
(1) 		16.1
(3) 		5.9
(-1.6) 		2.7
(-3) 		9
(-0.2) 		3
(-2.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.596
Sequence Type Exemplar sequence
Representative Public ID C10G11.2 NCBI
Target Description C10G11.2 /REP_DB=WormBase Gene ID /WP=CE20497 /GEN=srh-50 /TR=P91032 /GB=AAB42242.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059417 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-50) (srh-50) mRNA, complete cds. 11/11 None
C10G11.2 ENSEMBL cdna:known chromosome:CEL140:I:6310609:6312398:1 gene:C10G11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6310537-6312327(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-50
Ensembl C10G11.2
Entrez Gene 191861 Entrez gene
SwissProt P91032 EMBL-EBI
WormBase CE20497 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42242 Serpentine receptor, class h protein 50 [Caenorhabditis elegans] ref|NP_491818.1| Serpentine Receptor, class H family member (srh-50) [Caenorhabditis elegans] 1.0E-174
blast AAB42243 Serpentine receptor, class h protein 51 [Caenorhabditis elegans] ref|NP_491817.1| Serpentine Receptor, class H family member (srh-51) [Caenorhabditis elegans] 7.0E-97
blast AAB42244 Serpentine receptor, class h protein 49 [Caenorhabditis elegans] ref|NP_491816.1| Serpentine Receptor, class H family member (srh-49) [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491818.1 7 31-49,62-84,104-126,147-169,209-231,255-277,287-309
C10G11.2 7 31-49,62-84,104-126,147-169,209-231,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:191248_AT
ttggtcccctcaacagatgtgttttatcaaataagggatcaacacaggatattgatcggc
attttcaattttttcgcgggggctacaaattcaattcctgtattgcttcaggaagagtca
caagagcttttaaaattgaaatacttagaaatacttccatgtccaatagatttgtatttc
aattcatgttcattcgcggtagtcaaacaatttgacatttggagtggtttggcttatttc
acaaatattatgatagccattgaaattattttcctgattgttcacagttttatatatctt
cgcaaaagtcagatggtttccacgttttctgtccgaacaaaacaactacaaaaagctttc
tttaaagccgcacttgctcaggcttcatctccgattcttgtactcgcagttcctgtattt
ttagttgcatatgtgaattcaaccagatactatttacaaggattaatcaatgtttgcatt
ttatttatatcggcaaatagtgctatatcaacattttctcttctgctgttcaattctcca
tacagaatattctttaaaaatctgttaatttcgcgatctacaccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTCCCCTCAACAGATGTGTTTT 706 705 409 Antisense
TTCGCGGGGGCTACAAATTCAATTC 249 229 481 Antisense
GAAATACTTCCATGTCCAATAGATT 559 361 556 Antisense
ATTCATGTTCATTCGCGGTAGTCAA 418 11 590 Antisense
TTCACAGTTTTATATATCTTCGCAA 43 687 689 Antisense
CAGATGGTTTCCACGTTTTCTGTCC 115 207 718 Antisense
TAAAGCCGCACTTGCTCAGGCTTCA 143 641 771 Antisense
TTCATCTCCGATTCTTGTACTCGCA 200 689 792 Antisense
TGTACTCGCAGTTCCTGTATTTTTA 51 561 807 Antisense
CTTCTGCTGTTCAATTCTCCATACA 295 221 928 Antisense
GTTAATTTCGCGATCTACACCAGAT 689 445 972 Antisense
Sequence Source Affymetrix Proprietary Database