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[191247_at] 7TM chemoreceptor, str family

Description T01G6.9 /REP_DB=WormBase Gene ID /WP=CE25978 /GEN=str-256 /TR=Q9GUD0 /GB=AAG24185.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 10      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 2.2
(-3)
A 		11.6
(-2.4)
A 		2.3
(-3)
A 		90.6
(3)
A 		88
B 4.6
(-2.7)
A 		4
(-2.7)
A 		1.4
(-3)
A 		58.7
(3)
A 		57
C 2
(-3)
A 		10.4
(-2.4)
A 		5.5
(-2.8)
A 		92.6
(3)
A 		91
avr 2.9
(-3) 		8.7
(-2.6) 		3.1
(-3) 		80.6
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 10.1
(3)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		7.2
(0.8)
A 		4.3
(-1.4)
A 		7.3
(0.9)
A 		8
B 4.3
(0.5)
A 		6.6
(3)
A 		3
(-0.9)
A 		4.2
(0.4)
A 		1.1
(-3)
A 		5.1
(1.4)
A 		6
C 3.5
(-2.8)
A 		3.3
(-2.8)
A 		47.3
(3)
A 		18.4
(-0.8)
A 		1.7
(-3)
A 		3.3
(-2.8)
A 		46
avr 6
(-1.6) 		4
(-2.4) 		17.5
(3) 		9.9
(-0) 		2.4
(-3) 		5.2
(-1.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.8
(-2.9)
A 		2.5
(-2.1)
A 		0.6
(-3)
A 		13.3
(3)
A 		13
B 1.5
(-2.4)
A 		1
(-2.7)
A 		0.3
(-3)
A 		12.5
(3)
A 		12
C 0.7
(-3)
A 		3
(-2.1)
A 		1.9
(-2.5)
A 		15.6
(3)
A 		15
avr 1
(-3) 		2.2
(-2.4) 		0.9
(-3) 		13.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.9
(3)
A 		0.7
(-2.1)
A 		0.5
(-3)
A 		1.8
(2.6)
A 		1.3
(0.4)
A 		1.8
(2.6)
A 		1
B 1.5
(0.5)
A 		2.2
(3)
A 		0.7
(-2.3)
A 		1.1
(-0.9)
A 		0.5
(-3)
A 		1.9
(1.9)
A 		2
C 1.3
(-2.6)
A 		1
(-2.8)
A 		12
(3)
A 		3.7
(-1.4)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		11
avr 1.6
(-1.7) 		1.3
(-2.2) 		4.4
(3) 		2.2
(-0.7) 		0.8
(-3) 		1.6
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15786
Sequence Type Exemplar sequence
Representative Public ID T01G6.9 NCBI
Target Description T01G6.9 /REP_DB=WormBase Gene ID /WP=CE25978 /GEN=str-256 /TR=Q9GUD0 /GB=AAG24185.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070822 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-256) (str-256) mRNA, complete cds. 11/11 None
GENEFINDER00000004013 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:499482:501159:-1 11/11 None
T01G6.9 ENSEMBL cdna:known chromosome:CEL140:V:499599:501159:-1 gene:T01G6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004001 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:499598-501159(-) 99.62 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-256
Ensembl T01G6.9
Entrez Gene 192045 Entrez gene
SwissProt Q9GUD0 EMBL-EBI
WormBase CE25978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24185 Seven tm receptor protein 256 [Caenorhabditis elegans] ref|NP_503223.1| Seven TM Receptor family member (str-256) [Caenorhabditis elegans] 0.0
blast T32197 hypothetical protein T01G6.9 - Caenorhabditis elegans 1.0E-163
blast AAG24185 Seven tm receptor protein 256 [Caenorhabditis elegans] ref|NP_503223.1| Seven TM Receptor family member (str-256) [Caenorhabditis elegans] 1.0E-163
blast T32197 hypothetical protein T01G6.9 - Caenorhabditis elegans 1.0E-145
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-110
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 3.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.4E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.3E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.3E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503223.1 7 6-28,35-57,86-108,129-151,206-225,253-275,285-307
T01G6.9 7 6-28,35-57,86-108,129-151,206-225,253-275,285-307
GENEFINDER00000004013 8 7-26,41-58,127-149,204-223,250-272,287-306,319-341,351-370
Sequence
Target Sequence 
>C. ELEGANS:191247_AT
gcggtattctaatgagcgccgacccacagaccgataggtttttgaatgaaaattatcaag
aaatttcggaaaacactacatcattggaagatctttattatgtgggcccacttttttggc
cgaaacatgacaactctacaactgagcaatatttcagctggaaagctgcaaaagcttgta
taattgctatgggagtcattactatatctagctcgataatgctatattttggtgtgaaag
gatatcgaatgatgagcaaactaattgctacagcaggagtctcctacaaattcaaaacta
tccagaagcagctgttcattgccctcctttttcaaacagcgattccagtctttctcatgc
atcttccagcaactgcaatttacgttaccatatttttgggcaattctaaagaaattattg
gtgaaataatcagtctaacaattgcattgtatccggctttgaatccgattccaaccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGTATTCTAATGAGCGCCGACCC 467 291 452 Antisense
CGACCCACAGACCGATAGGTTTTTG 468 249 471 Antisense
GAAGATCTTTATTATGTGGGCCCAC 66 339 538 Antisense
TATGTGGGCCCACTTTTTTGGCCGA 692 653 550 Antisense
GGCCGAAACATGACAACTCTACAAC 224 543 569 Antisense
AATTGCTACAGCAGGAGTCTCCTAC 687 177 714 Antisense
CCAGAAGCAGCTGTTCATTGCCCTC 200 273 753 Antisense
TCAAACAGCGATTCCAGTCTTTCTC 609 629 783 Antisense
CAGCAACTGCAATTTACGTTACCAT 11 205 818 Antisense
AATTGCATTGTATCCGGCTTTGAAT 308 177 891 Antisense
GGCTTTGAATCCGATTCCAACCCTT 467 537 906 Antisense
Sequence Source Affymetrix Proprietary Database