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[191245_at] 7TM chemoreceptor, str family

Description T08B6.3 /REP_DB=WormBase Gene ID /WP=CE17224 /GEN=str-161 /TR=O44528 /GB=AAB94157.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 25      4grp_total > 04      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 10.2
(-2.7)
A 		2.9
(-3)
A 		5
(-2.9)
A 		132.8
(3)
A 		130
B 49.6
(3)
A 		5.3
(-2.9)
A 		4.9
(-3)
A 		39.3
(1.6)
A 		45
C 3.7
(-3)
A 		5.3
(-2.9)
A 		3.4
(-3)
A 		101.7
(3)
A 		98
avr 21.2
(-1.8) 		4.5
(-3) 		4.4
(-3) 		91.3
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 24.9
(3)
A 		3.1
(-3)
A 		5.7
(-2.3)
A 		4.5
(-2.6)
A 		4
(-2.8)
A 		4.4
(-2.6)
A 		22
B 5.9
(-2.2)
A 		38.2
(3)
A 		8.3
(-1.8)
A 		4.1
(-2.5)
A 		1.2
(-3)
A 		2.3
(-2.8)
A 		37
C 4.7
(3)
A 		2.7
(-0.4)
A 		2.1
(-1.5)
A 		1.2
(-3)
A 		1.6
(-2.3)
A 		2.1
(-1.5)
A 		4
avr 11.8
(1.6) 		14.7
(3) 		5.4
(-1.5) 		3.3
(-2.5) 		2.3
(-3) 		2.9
(-2.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.7
(-2)
A 		0.6
(-3)
A 		1.3
(-2.8)
A 		19.4
(3)
A 		19
B 15.8
(3)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		8.4
(-0)
A 		15
C 1.2
(-3)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		17.2
(3)
A 		16
avr 6.9
(-0.5) 		1.1
(-3) 		1.2
(-3) 		15
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.6
(3)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		1.1
(-3)
A 		4
B 2
(-2.3)
A 		12.7
(3)
A 		2
(-2.3)
A 		1.1
(-2.7)
A 		0.5
(-3)
A 		0.9
(-2.8)
A 		12
C 1.7
(3)
A 		0.8
(-0.6)
A 		0.5
(-1.8)
A 		0.2
(-3)
A 		0.5
(-1.8)
A 		0.7
(-1)
A 		2
avr 2.8
(-0) 		4.9
(3) 		1.2
(-2.3) 		0.8
(-2.9) 		0.7
(-3) 		0.9
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10631
Sequence Type Exemplar sequence
Representative Public ID T08B6.3 NCBI
Target Description T08B6.3 /REP_DB=WormBase Gene ID /WP=CE17224 /GEN=str-161 /TR=O44528 /GB=AAB94157.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068267 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-161) (str-161) mRNA, complete cds. 11/11 None
SNAP00000024945 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4902412:4903175:-1 9/11 None
GENEFINDER00000024952 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4902412:4905061:-1 11/11 None
T08B6.3 ENSEMBL cdna:known chromosome:CEL140:IV:4902412:4904051:-1 gene:T08B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4902417-4904057(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-161
Ensembl T08B6.3
Entrez Gene 192019 Entrez gene
SwissProt O44528 EMBL-EBI
WormBase CE17224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 0.0
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-164
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-105
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 1.0E-104
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 1.0E-101
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 6.0E-90
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 5.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-16
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.3E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500668.1 7 10-29,42-64,91-113,133-155,201-223,256-278,288-306
T08B6.3 7 10-29,42-64,91-113,133-155,201-223,256-278,288-306
SNAP00000024945 3 53-75,108-130,140-158
GENEFINDER00000024952 6 60-82,115-137,157-179,225-247,280-302,312-330
Sequence
Target Sequence 
>C. ELEGANS:191245_AT
ggatttatcacttcgatgctgtacttgacaattggcccccgagacgaaatttctgattac
gtgagagaaaatttaaaacttgactatcaggtagatattgataaatcaacatatgttgga
tggctatattggaaattggaatttggatctaaagttttgaatatgagagatctcgaagta
tatttgggtctcaatgcgttaatgatggttcctttctgtataattatactttatggtttc
aaaagttatttgaaaatcaaggatttgatatctcatggggaaagtgaatattctaagaga
cttcaattacagctttacaaagcacttgtatctcaaactctaattcctgttatattttta
tttgcaccgactggtttccttcttacatgcccgttatttggaattgacataaaatggtcg
aacgaaccaattacaataatctactcaatttaccttgccgttgactctatgccaatcatt
tttctggtcgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTATCACTTCGATGCTGTACT 135 509 442 Antisense
GATGCTGTACTTGACAATTGGCCCC 126 413 456 Antisense
TGGCCCCCGAGACGAAATTTCTGAT 438 543 474 Antisense
GATCTCGAAGTATATTTGGGTCTCA 234 419 610 Antisense
ATGATGGTTCCTTTCTGTATAATTA 279 45 643 Antisense
GAGACTTCAATTACAGCTTTACAAA 619 393 738 Antisense
CTTGTATCTCAAACTCTAATTCCTG 509 217 766 Antisense
TTATTTGCACCGACTGGTTTCCTTC 356 677 799 Antisense
TCCTTCTTACATGCCCGTTATTTGG 128 591 818 Antisense
ATCTACTCAATTTACCTTGCCGTTG 155 33 880 Antisense
ATGCCAATCATTTTTCTGGTCGATG 306 41 910 Antisense
Sequence Source Affymetrix Proprietary Database