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[191244_at] UDP-glucuronosyltransferase

Description R11A8.3 /REP_DB=WormBase Gene ID /WP=CE06301 /TR=Q21922 /GB=CAA94365.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_high1_10_10 > 91      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_total > 93      4grp_total > 27      6grp_cgc > 98      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 80.9
(-0.4)
P 		113.2
(2.3)
P 		51.3
(-3)
P 		120.8
(3)
P 		70
B 74.9
(-3)
P 		119.3
(3)
P 		75.3
(-2.9)
P 		114.8
(2.4)
P 		44
C 68.4
(-3)
P 		94
(-1.8)
P 		84.5
(-2.3)
P 		200.9
(3)
P 		133
avr 74.7
(-2.7) 		108.8
(0.1) 		70.4
(-3) 		145.5
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 95.9
(0.1)
P 		89.6
(-0.5)
P 		101
(0.5)
P 		61.3
(-3)
P 		129.3
(3)
P 		62.7
(-2.9)
A 		68
B 134.2
(0.1)
P 		76.5
(-2.5)
P 		66.4
(-3)
P 		78.2
(-2.5)
P 		196.3
(3)
P 		75.7
(-2.6)
P 		130
C 93.8
(0.5)
P 		133.4
(2)
P 		2
(-3)
A 		149.2
(2.6)
P 		159
(3)
P 		82.6
(0.1)
P 		157
avr 108
(-0.1) 		99.8
(-0.5) 		56.5
(-3) 		96.2
(-0.7) 		161.5
(3) 		73.7
(-2) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 29.5
(3)
P 		24.6
(1.2)
P 		13.4
(-3)
P 		17.7
(-1.4)
P 		16
B 23.9
(0.2)
P 		29.5
(3)
P 		17.4
(-3)
P 		24.5
(0.5)
P 		12
C 22.6
(-3)
P 		27
(-0.7)
P 		29.4
(0.6)
P 		33.9
(3)
P 		11
avr 25.3
(1.5) 		27
(3) 		20.1
(-3) 		25.4
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 17.7
(-2.4)
P 		31.9
(1.2)
P 		22
(-1.3)
P 		15.6
(-2.9)
P 		39
(3)
P 		15.3
(-3)
A 		24
B 46.7
(-0.1)
P 		25.5
(-2.1)
P 		16.1
(-3)
P 		20.7
(-2.6)
P 		79.8
(3)
P 		28.2
(-1.9)
P 		64
C 34.8
(1)
P 		40.7
(1.7)
P 		0.5
(-3)
A 		30
(0.5)
P 		51.5
(3)
P 		27.7
(0.2)
P 		51
avr 33.1
(-0.2) 		32.7
(-0.3) 		12.9
(-3) 		22.1
(-1.7) 		56.8
(3) 		23.7
(-1.5) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10343
Sequence Type Exemplar sequence
Representative Public ID R11A8.3 NCBI
Target Description R11A8.3 /REP_DB=WormBase Gene ID /WP=CE06301 /TR=Q21922 /GB=CAA94365.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069510 NCBI Caenorhabditis elegans R11A8.3 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000003254 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10360772:10363288:1 11/11 None
R11A8.3 ENSEMBL cdna:known chromosome:CEL140:IV:10360772:10363288:1 gene:R11A8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003243 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10360777-10363294(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-59
Ensembl R11A8.3
Entrez Gene 187799 Entrez gene
SwissProt Q21922 EMBL-EBI
WormBase CE06301 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94365 Hypothetical protein R11A8.3 [Caenorhabditis elegans] ref|NP_501911.1| R11A8.3 [Caenorhabditis elegans] 0.0
blast CAE63837 Hypothetical protein CBG08393 [Caenorhabditis briggsae] 1.0E-167
blast CAA92791 Hypothetical protein C33A12.6 [Caenorhabditis elegans] ref|NP_501680.1| C33A12.6 [Caenorhabditis elegans] 3.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.5E-35
Sequence
Target Sequence 
>C. ELEGANS:191244_AT
gaatcttctatgatagtttcgccagattttctcatatcacattcatagttaaatatgaaa
cttcatcaaattcaactatttcagtgccagacaatgtaatactgacgccatggataccac
aattaccattaatggctcataaaaactataaaacaattataactcatggtggatggagta
gtattttagagacaacaatgcattcgaaaccaatgattttaatgccattatttgctgatc
atgcgaagaattcaaaagttgcagaatctaaaggagttgctgttttattggataaaatga
gattgagtcgacgaagagttgtccatgcaatttacacgattttgaccaatccaaaatata
cccaaaattgcgaaaaattctcccgaatgttttctgatactccaattccacacgaagaac
ttattgaatggaggattcgacaagcagctaagccatcaagaaaagcttttgcaaaacatc
ttcgacccaaagagcccgatttttcatatttaaaacttggttttctcattattccagcca
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTTCTATGATAGTTTCGCCAG 115 329 953 Antisense
GTTTCGCCAGATTTTCTCATATCAC 343 451 968 Antisense
AATTCAACTATTTCAGTGCCAGACA 674 175 1021 Antisense
AATACTGACGCCATGGATACCACAA 672 171 1050 Antisense
ATGCCATTATTTGCTGATCATGCGA 473 41 1174 Antisense
GAGTCGACGAAGAGTTGTCCATGCA 587 399 1257 Antisense
ATGTTTTCTGATACTCCAATTCCAC 377 47 1339 Antisense
GGAGGATTCGACAAGCAGCTAAGCC 68 517 1382 Antisense
GCTTTTGCAAAACATCTTCGACCCA 113 289 1417 Antisense
GACCCAAAGAGCCCGATTTTTCATA 625 381 1436 Antisense
TGGTTTTCTCATTATTCCAGCCATG 369 551 1470 Antisense
Sequence Source Affymetrix Proprietary Database