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[191241_at] 7TM chemoreceptor, str family

Description C02E7.9 /REP_DB=WormBase Gene ID /WP=CE25748 /GEN=str-205 /TR=O16434 /GB=AAC24168.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 36      4grp_total > 19      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 34.6
(-2.4)
A 		46.5
(-1.8)
A 		24.8
(-3)
A 		129
(3)
P 		104
B 53
(-0.1)
A 		35.5
(-3)
A 		44.8
(-1.4)
A 		71.1
(3)
M 		36
C 45.5
(-2)
P 		112
(0.3)
M 		16
(-3)
A 		190.7
(3)
P 		175
avr 44.4
(-2.1) 		64.7
(-0.9) 		28.5
(-3) 		130.3
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 37
(2.2)
A 		5.8
(-3)
A 		31.5
(1.3)
A 		41.6
(3)
A 		27.6
(0.7)
A 		27.1
(0.6)
A 		36
B 24.3
(0.1)
A 		45.3
(3)
A 		18.5
(-0.7)
A 		22.2
(-0.2)
A 		1.7
(-3)
A 		24.7
(0.2)
A 		44
C 23.1
(-0.9)
A 		60.7
(3)
A 		26
(-0.6)
A 		2.4
(-3)
A 		11.6
(-2.1)
A 		30.5
(-0.1)
A 		58
avr 28.1
(0.7) 		37.3
(3) 		25.3
(-0) 		22.1
(-0.8) 		13.6
(-3) 		27.4
(0.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 12.6
(-0)
A 		10.1
(-1.3)
A 		6.5
(-3)
A 		18.9
(3)
P 		12
B 16.9
(3)
A 		8.8
(-3)
A 		10.4
(-1.8)
A 		15.1
(1.7)
M 		8
C 15.1
(-0.9)
P 		32.2
(3)
M 		5.6
(-3)
A 		32.2
(3)
P 		27
avr 14.9
(0) 		17
(0.9) 		7.5
(-3) 		22.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.8
(0.4)
A 		2.1
(-3)
A 		6.9
(0.4)
A 		10.5
(3)
A 		8.3
(1.4)
A 		6.6
(0.2)
A 		8
B 8.4
(0.2)
A 		15.1
(3)
A 		4.5
(-1.4)
A 		5.9
(-0.8)
A 		0.7
(-3)
A 		9.2
(0.5)
A 		14
C 8.6
(-0.3)
A 		18.5
(3)
A 		6.6
(-1)
A 		0.5
(-3)
A 		3.7
(-1.9)
A 		10.2
(0.2)
A 		18
avr 7.9
(-0.1) 		11.9
(3) 		6
(-1.6) 		5.6
(-1.9) 		4.2
(-3) 		8.7
(0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15630
Sequence Type Exemplar sequence
Representative Public ID C02E7.9 NCBI
Target Description C02E7.9 /REP_DB=WormBase Gene ID /WP=CE25748 /GEN=str-205 /TR=O16434 /GB=AAC24168.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071925 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-205) (str-205) mRNA, complete cds. 11/11 None
SNAP00000015185 ENSEMBL cdna:SNAP chromosome:CEL140:V:4928079:4929756:-1 11/11 None
GENEFINDER00000015197 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4928092:4929756:-1 11/11 None
C02E7.9 ENSEMBL cdna:known chromosome:CEL140:V:4928092:4929756:-1 gene:C02E7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4928091-4929756(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-205
Ensembl C02E7.9
Entrez Gene 192028 Entrez gene
SwissProt O16434 EMBL-EBI
WormBase CE25748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24168 Seven tm receptor protein 205 [Caenorhabditis elegans] ref|NP_504326.1| Seven TM Receptor family member (str-205) [Caenorhabditis elegans] 0.0
blast AAC24168 Seven tm receptor protein 205 [Caenorhabditis elegans] ref|NP_504326.1| Seven TM Receptor family member (str-205) [Caenorhabditis elegans] 1.0E-155
blast CAE64235 Hypothetical protein CBG08870 [Caenorhabditis briggsae] 1.0E-128
blast CAE64235 Hypothetical protein CBG08870 [Caenorhabditis briggsae] 1.0E-111
blast NP_504817 Seven TM Receptor family member (str-204) [Caenorhabditis elegans] gb|AAC48232.1| Seven tm receptor protein 204 [Caenorhabditis elegans] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.2E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504326.1 7 15-32,45-67,91-113,133-155,198-220,246-268,283-305
C02E7.9 7 15-32,45-67,91-113,133-155,198-220,246-268,283-305
SNAP00000015185 7 15-32,45-67,91-113,133-155,193-210,217-239,254-276
GENEFINDER00000015197 7 15-32,45-67,91-113,133-155,198-220,246-268,283-305
Sequence
Target Sequence 
>C. ELEGANS:191241_AT
ggttcgattgctgtggttttttgtggtccaagagatataactgacaaagtgattgaattc
gatcttttagacagtttggatatcaactttaagaatactgtgtacgtagctccatacttg
tttgatgagcatcacgaaatatactggccagttgtaatttcccttcttgtggattgcatc
attattaattcttcatttttcactgtttgctattttggctatcagactttcagggaattg
agaaaactaaaatatagcaatgtttctcttaagaataaaaccctccaagttcaactttac
tatgcgctggttacacagacccttattccagtcattctcttacaacttcctgctacgatt
ttatttctctctgtgtttgtctcttttgacgttggtgaattcagtggtcttgttgcgatg
acaatcgctgtctatcccgcaattgatccgctgccaacaatgtttattgtgacaagttat
cgtcatggaattttggaaatattcaataaaataacgaggattattatgtgtcgatggaat
cgcccaactcgacaaggaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCGATTGCTGTGGTTTTTTGTG 124 507 454 Antisense
GTGTACGTAGCTCCATACTTGTTTG 366 483 553 Antisense
TACTGGCCAGTTGTAATTTCCCTTC 630 645 595 Antisense
ATTTCCCTTCTTGTGGATTGCATCA 390 17 610 Antisense
TATGCGCTGGTTACACAGACCCTTA 410 657 754 Antisense
CTTATTCCAGTCATTCTCTTACAAC 242 223 775 Antisense
TCTTACAACTTCCTGCTACGATTTT 174 617 791 Antisense
ATTTTATTTCTCTCTGTGTTTGTCT 481 15 811 Antisense
CGATGACAATCGCTGTCTATCCCGC 79 249 869 Antisense
GCAATTGATCCGCTGCCAACAATGT 654 321 892 Antisense
AATCGCCCAACTCGACAAGGAACCT 563 165 991 Antisense
Sequence Source Affymetrix Proprietary Database