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[191239_at] 7TM chemoreceptor, str family

Description T08B6.6 /REP_DB=WormBase Gene ID /WP=CE17227 /GEN=str-166 /TR=O44532 /GB=AAB94158.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 06      4grp_total > 13      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 117.1
(-1.1)
A 		57.8
(-3)
A 		80.6
(-2.3)
P 		245.3
(3)
P 		188
B 92.3
(-0.2)
P 		85.8
(-0.5)
A 		40.3
(-3)
A 		151.4
(3)
P 		111
C 131.3
(2.7)
A 		80.1
(-1.4)
A 		60.3
(-3)
A 		135
(3)
A 		75
avr 113.6
(-0.3) 		74.6
(-2.3) 		60.4
(-3) 		177.2
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 144
(3)
A 		61.3
(-3)
A 		70.5
(-2.3)
A 		63.7
(-2.8)
P 		87.4
(-1.1)
A 		84.9
(-1.3)
A 		83
B 139.2
(3)
P 		112.7
(0.4)
M 		80
(-2.8)
A 		79.4
(-2.8)
A 		77.8
(-3)
A 		89.2
(-1.9)
A 		61
C 97.1
(1)
M 		124.3
(3)
A 		67.6
(-1.1)
A 		114.4
(2.3)
A 		60.2
(-1.6)
A 		41.4
(-3)
A 		83
avr 126.8
(3) 		99.4
(0) 		72.7
(-2.9) 		85.8
(-1.5) 		75.1
(-2.6) 		71.8
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 42.6
(3)
A 		12.5
(-3)
A 		21.1
(-1.3)
P 		35.9
(1.7)
P 		30
B 29.4
(2.2)
P 		21.2
(0.1)
A 		9.3
(-3)
A 		32.3
(3)
P 		23
C 43.5
(3)
A 		23
(-2.5)
A 		21
(-3)
A 		22.8
(-2.5)
A 		23
avr 38.5
(3) 		18.9
(-2.5) 		17.1
(-3) 		30.3
(0.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 26.5
(3)
A 		21.8
(0.5)
A 		15.3
(-3)
A 		16.2
(-2.5)
P 		26.4
(2.9)
A 		20.7
(-0.1)
A 		11
B 48.4
(3)
P 		37.5
(0.7)
M 		19.4
(-3)
A 		21
(-2.7)
A 		31.6
(-0.5)
A 		33.3
(-0.1)
A 		29
C 36
(2.5)
M 		37.9
(3)
A 		17.2
(-2.2)
A 		23
(-0.7)
A 		19.5
(-1.6)
A 		13.9
(-3)
A 		24
avr 37
(3) 		32.4
(1.6) 		17.3
(-3) 		20.1
(-2.1) 		25.8
(-0.4) 		22.6
(-1.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10841
Sequence Type Exemplar sequence
Representative Public ID T08B6.6 NCBI
Target Description T08B6.6 /REP_DB=WormBase Gene ID /WP=CE17227 /GEN=str-166 /TR=O44532 /GB=AAB94158.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068263 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-166) (str-166) mRNA, complete cds. 11/11 None
SNAP00000024940 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4884286:4886852:1 11/11 None
GENEFINDER00000024951 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4884286:4886852:1 11/11 None
T08B6.6 ENSEMBL cdna:known chromosome:CEL140:IV:4884286:4886852:1 gene:T08B6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4884291-4886858(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-166
Ensembl T08B6.6
Entrez Gene 192021 Entrez gene
SwissProt O44532 EMBL-EBI
WormBase CE17227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500664 Seven TM Receptor family member (str-166) [Caenorhabditis elegans] gb|AAB94158.1| Seven tm receptor protein 166 [Caenorhabditis elegans] 0.0
blast CAE66411 Hypothetical protein CBG11678 [Caenorhabditis briggsae] 1.0E-151
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 9.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.8E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500664.1 7 10-32,44-66,91-113,126-148,202-224,252-274,284-306
T08B6.6 7 10-32,44-66,91-113,126-148,202-224,252-274,284-306
SNAP00000024940 7 10-32,44-66,91-113,126-148,202-224,252-274,284-306
GENEFINDER00000024951 7 10-32,44-66,91-113,126-148,202-224,252-274,284-306
Sequence
Target Sequence 
>C. ELEGANS:191239_AT
ttggtttcatctttcttggttctactatagaagaaatgataaaacaacagaatatatcaa
ggaagcagtattggaaaactttggtctccacatgaatgagaccgtctactctgcagcatt
attttacccggcagatgaacatggagttcctaatttggatatcaagatttttatcagtta
tgtcatcctctctttcagtatggtaattccattcgcagtaatgcttgttgccggggtgaa
gagccattcacaaatcaaaaaattgattgaacaaggagaatgtgactacacaaaacgact
acagttgcagctgtacaaggcattactggtgcagacatttctcccaatcttcttgttctt
catgccaatgggagcattgttcagtgctccactttttcatattgacatcggaagttggtc
atatctcactacatacctgtatgctttgtatccagcagtcgatccacttccaattatgtt
tatagtacaagaatatcgaaatgcgtttattgaactattcgactgcttccgatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTTTCATCTTTCTTGGTTCTAC 582 707 447 Antisense
GAATGAGACCGTCTACTCTGCAGCA 20 331 540 Antisense
ACTCTGCAGCATTATTTTACCCGGC 16 101 554 Antisense
TGTCATCCTCTCTTTCAGTATGGTA 361 559 627 Antisense
CAGTAATGCTTGTTGCCGGGGTGAA 428 205 662 Antisense
ACTGGTGCAGACATTTCTCCCAATC 273 97 771 Antisense
CAGTGCTCCACTTTTTCATATTGAC 678 207 828 Antisense
GTCATATCTCACTACATACCTGTAT 620 467 864 Antisense
GCTTTGTATCCAGCAGTCGATCCAC 424 303 889 Antisense
GTCGATCCACTTCCAATTATGTTTA 669 473 904 Antisense
GAACTATTCGACTGCTTCCGATGTT 588 349 958 Antisense
Sequence Source Affymetrix Proprietary Database