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[191238_at] 7TM chemoreceptor, str family

Description F41B5.8 /REP_DB=WormBase Gene ID /WP=CE25880 /GEN=str-253 /TR=O16674 /GB=AAG24108.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 99      4grp_total > 13      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 71
(-0.7)
A 		49.3
(-2.2)
A 		37
(-3)
A 		126.9
(3)
P 		90
B 121.2
(3)
M 		100.8
(-0)
A 		80.9
(-3)
M 		115.6
(2.2)
P 		40
C 99.3
(-1.3)
P 		70.4
(-3)
A 		75.3
(-2.7)
A 		174.1
(3)
P 		104
avr 97.2
(-0.4) 		73.5
(-2.3) 		64.4
(-3) 		138.9
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 89.2
(1.2)
A 		41.6
(-3)
A 		76.9
(0.1)
A 		41.7
(-3)
A 		110
(3)
A 		102.5
(2.3)
A 		68
B 65.9
(-0.6)
P 		46.6
(-3)
A 		94.3
(3)
P 		72.1
(0.2)
P 		70.5
(0)
P 		71.4
(0.1)
A 		48
C 73.2
(-0.9)
P 		83.3
(0.8)
P 		61.3
(-3)
A 		95.7
(3)
A 		93.6
(2.6)
A 		89.3
(1.9)
A 		34
avr 76.1
(0.3) 		57.2
(-3) 		77.5
(0.6) 		69.8
(-0.8) 		91.4
(3) 		87.7
(2.4) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 25.8
(3)
A 		10.7
(-2.6)
A 		9.7
(-3)
A 		18.6
(0.3)
P 		16
B 38.6
(3)
M 		24.9
(-1.1)
A 		18.7
(-3)
M 		24.6
(-1.2)
P 		20
C 32.9
(3)
P 		20.2
(-3)
A 		26.3
(-0.1)
A 		29.4
(1.3)
P 		13
avr 32.4
(3) 		18.6
(-2.8) 		18.2
(-3) 		24.2
(-0.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.4
(-1.5)
A 		14.8
(-1.9)
A 		16.8
(-1.4)
A 		10.6
(-3)
A 		33.2
(3)
A 		25
(0.8)
A 		23
B 22.9
(0.4)
P 		15.5
(-3)
A 		22.9
(0.4)
P 		19.1
(-1.4)
P 		28.6
(3)
P 		26.6
(2.1)
A 		13
C 27.1
(1.7)
P 		25.4
(1)
P 		15.6
(-3)
A 		19.2
(-1.5)
A 		30.3
(3)
A 		29.9
(2.8)
A 		15
avr 22.1
(-0.6) 		18.6
(-2) 		18.4
(-2.1) 		16.3
(-3) 		30.7
(3) 		27.2
(1.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14969
Sequence Type Exemplar sequence
Representative Public ID F41B5.8 NCBI
Target Description F41B5.8 /REP_DB=WormBase Gene ID /WP=CE25880 /GEN=str-253 /TR=O16674 /GB=AAG24108.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071218 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-253) (str-253) mRNA, complete cds. 11/11 None
GENEFINDER00000036017 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2252632:2255046:-1 10/11 None
F41B5.8 ENSEMBL cdna:known chromosome:CEL140:V:2252632:2254431:-1 gene:F41B5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036002 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2252631-2254431(-) 97.18 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-253
Ensembl F41B5.8
Entrez Gene 185592 Entrez gene
SwissProt O16674 EMBL-EBI
WormBase CE25880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24108 Seven tm receptor protein 253 [Caenorhabditis elegans] ref|NP_503619.1| Seven TM Receptor family member (str-253) [Caenorhabditis elegans] 0.0
blast T32039 hypothetical protein F41B5.8 - Caenorhabditis elegans 1.0E-173
blast AAG24108 Seven tm receptor protein 253 [Caenorhabditis elegans] ref|NP_503619.1| Seven TM Receptor family member (str-253) [Caenorhabditis elegans] 1.0E-152
blast T32039 hypothetical protein F41B5.8 - Caenorhabditis elegans 1.0E-136
blast CAB07343 Hypothetical protein F10A3.9 [Caenorhabditis elegans] ref|NP_507067.1| Seven TM Receptor family member (str-254) [Caenorhabditis elegans] 1.0E-122
blast CAB07343 Hypothetical protein F10A3.9 [Caenorhabditis elegans] ref|NP_507067.1| Seven TM Receptor family member (str-254) [Caenorhabditis elegans] 5.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.1E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.1E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503619.1 8 16-38,43-65,101-123,138-160,173-195,210-232,262-284,299-318
F41B5.8 8 16-38,43-65,101-123,138-160,173-195,210-232,262-284,299-318
GENEFINDER00000036017 6 66-88,93-115,152-174,215-237,267-289,304-323
Sequence
Target Sequence 
>C. ELEGANS:191238_AT
tttgtggctgccgttatttttgctggaaaagaagactcggacagatatttgaagaaattc
tatttaccattggctcaacacctagttaattttgaggacatatattgtattggtccgttt
tattacttgaaagatgtcaatggaaagtcttatataaactggatatcgtttcaaggaacg
gcgatttccttatcactaatttgtctttcgttcacgacaatgatatattttggctcaaaa
ggttacaaatcaatgagcgaattgatgagcctctccaccgtatcggaccatgtaaaaaat
atccattctcagcttttcaaaaccttaatttttcaaaccatgatcccagtgctcctcatg
catattcctgcaactgtcacatatataacatcatttttcaacgtttcatcggaaattttc
ggcgaaattcttgacttgagcattgcactttacccagtgctaaacccgctgccaacgata
tttattgtcacaagctatagaaaagctgttattgatttattatgttgccgaaaaaaaatt
gttccactctcaactgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGGCTGCCGTTATTTTTGCTG 326 665 472 Antisense
ATTTACCATTGGCTCAACACCTAGT 574 1 533 Antisense
GAACGGCGATTTCCTTATCACTAAT 127 349 647 Antisense
TCACTAATTTGTCTTTCGTTCACGA 398 625 664 Antisense
TGAGCGAATTGATGAGCCTCTCCAC 629 569 725 Antisense
CTCTCCACCGTATCGGACCATGTAA 496 231 742 Antisense
ATCCATTCTCAGCTTTTCAAAACCT 561 39 772 Antisense
GCATATTCCTGCAACTGTCACATAT 237 309 831 Antisense
ACATCATTTTTCAACGTTTCATCGG 172 107 859 Antisense
CTAAACCCGCTGCCAACGATATTTA 649 225 931 Antisense
AAAAATTGTTCCACTCTCAACTGCT 687 127 1005 Antisense
Sequence Source Affymetrix Proprietary Database