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[191237_at] ammonium transport protein

Description ZK430.2 /REP_DB=WormBase Gene ID /WP=CE05079 /TR=Q23493 /GB=AAA83579.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ammonium transport protein
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 74      6grp_total > 40      4grp_total > 59      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 501.6
(-0.3)
P 		734.9
(3)
P 		735.5
(3)
P 		306.6
(-3)
P 		429
B 636.5
(1.6)
P 		690.9
(2.3)
P 		746.8
(3)
P 		279.6
(-3)
P 		467
C 483.1
(-1)
P 		697.4
(1.2)
P 		867.1
(3)
P 		294.3
(-3)
P 		573
avr 540.4
(0) 		707.7
(2.1) 		783.1
(3) 		293.5
(-3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 669.7
(0.5)
P 		528.5
(-1.7)
P 		831.7
(3)
P 		543.4
(-1.5)
P 		515.6
(-1.9)
P 		445
(-3)
P 		387
B 811
(3)
P 		721
(1.1)
P 		683.9
(0.3)
P 		782.3
(2.4)
P 		525
(-3)
P 		637.3
(-0.6)
P 		286
C 481.3
(-2)
P 		730.7
(2.9)
P 		599.3
(0.3)
P 		736.8
(3)
P 		432.2
(-3)
P 		726.2
(2.8)
P 		305
avr 654
(1.6) 		660.1
(1.7) 		705
(3) 		687.5
(2.5) 		490.9
(-3) 		602.8
(0.1) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 182.6
(2.6)
P 		159.5
(1.7)
P 		192.3
(3)
P 		44.9
(-3)
P 		147
B 203
(3)
P 		170.6
(1.6)
P 		173.1
(1.7)
P 		59.6
(-3)
P 		143
C 159.9
(-0.4)
P 		200.5
(0.6)
P 		302.2
(3)
P 		49.6
(-3)
P 		253
avr 181.8
(1.6) 		176.9
(1.4) 		222.5
(3) 		51.4
(-3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 123.5
(-1.9)
P 		187.9
(3)
P 		181.1
(2.5)
P 		137.8
(-0.8)
P 		155.6
(0.6)
P 		108.3
(-3)
P 		80
B 282.2
(3)
P 		240
(0.8)
P 		166.1
(-3)
P 		207.2
(-0.9)
P 		213.3
(-0.6)
P 		237.6
(0.7)
P 		116
C 178.4
(-0.8)
P 		222.9
(1.8)
P 		152.5
(-2.3)
P 		148.2
(-2.5)
P 		139.9
(-3)
P 		243.1
(3)
P 		103
avr 194.7
(0.5) 		216.9
(3) 		166.6
(-2.7) 		164.4
(-3) 		169.6
(-2.4) 		196.3
(0.6) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5133
Sequence Type Exemplar sequence
Representative Public ID ZK430.2 NCBI
Target Description ZK430.2 /REP_DB=WormBase Gene ID /WP=CE05079 /TR=Q23493 /GB=AAA83579.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ammonium transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062379 NCBI Caenorhabditis elegans ZK430.2 (ZK430.2) mRNA, complete cds. 11/11 None
GENEFINDER00000014029 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4419555:4422202:1 11/11 None
ZK430.2 ENSEMBL cdna:known chromosome:CEL140:II:4420263:4422248:1 gene:ZK430.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4420296-4422201(+) 100.0 100.0
Public Domain and Genome References
Gene Title ammonium transport protein
Ensembl ZK430.2
Entrez Gene 173777 Entrez gene
SwissProt Q23493 EMBL-EBI
WormBase CE05079 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585856_AT similar to 3(2),5-bisphosphate nucleotidase 1 (Bisphosphate 3-nucleotidase 1) (PAP-inositol-1,4-phosphatase) (PIP) cfa
CANINE_2:CFA.11221.1.A1_AT similar to 3(2),5-bisphosphate nucleotidase 1 (Bisphosphate 3-nucleotidase 1) (PAP-inositol-1,4-phosphatase) (PIP) cfa
CANINE_2:CFAAFFX.17067.1.S1_AT similar to 3(2),5-bisphosphate nucleotidase 1 (Bisphosphate 3-nucleotidase 1) (PAP-inositol-1,4-phosphatase) (PIP) cfa
DROSOPHILA_2:1630912_AT dm
DROSGENOME1:154689_AT dm
CHICKEN:GGA.7186.1.S1_AT 3'(2'), 5'-bisphosphate nucleotidase 1 gga
CHICKEN:GGA.7186.2.S1_A_AT 3'(2'), 5'-bisphosphate nucleotidase 1 gga
HG-U133_PLUS_2:219391_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U133A:219391_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-FOCUS:219391_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U133A_2:219391_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HU35KSUBC:RC_N93806_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
U133_X3P:G5174398_3P_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
U133_X3P:HS2.271752.2.S1_3P_S_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
U133_X3P:HS.271752.1.S1_3P_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U133_PLUS_2:1554575_A_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U133_PLUS_2:232103_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U133B:232103_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U95B:52755_I_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U95B:52757_R_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U95E:68382_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U95C:55094_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
HG-U95D:85033_R_AT 3'(2'), 5'-bisphosphate nucleotidase 1 hs
MG-U74AV2:103336_R_AT bisphosphate 3'-nucleotidase 1 mm
MOE430A:1449211_AT bisphosphate 3'-nucleotidase 1 mm
MOUSE430A_2:1449211_AT bisphosphate 3'-nucleotidase 1 mm
MOUSE430_2:1449211_AT bisphosphate 3'-nucleotidase 1 mm
MOE430A:1418764_A_AT bisphosphate 3'-nucleotidase 1 mm
MOUSE430A_2:1418764_A_AT bisphosphate 3'-nucleotidase 1 mm
MOUSE430_2:1418764_A_AT bisphosphate 3'-nucleotidase 1 mm
MU19KSUBB:TC33001_AT Bisphosphate 3'-nucleotidase 1, mRNA (cDNA clone MGC:13732 IMAGE:4160742) mm
RG-U34A:AJ000347_G_AT 3'(2'),5'-bisphosphate nucleotidase rn
RG-U34A:AJ000347_AT 3'(2'),5'-bisphosphate nucleotidase rn
RAE230A:1398317_AT 3'(2'),5'-bisphosphate nucleotidase rn
RAT230_2:1398317_AT 3'(2'),5'-bisphosphate nucleotidase rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4437 inositol or phosphatidylinositol phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83579 Hypothetical protein ZK430.2 [Caenorhabditis elegans] ref|NP_494780.1| ZK430.2 [Caenorhabditis elegans] 1.0E-180
blast AAA83579 Hypothetical protein ZK430.2 [Caenorhabditis elegans] ref|NP_494780.1| ZK430.2 [Caenorhabditis elegans] 1.0E-175
blast CAE60135 Hypothetical protein CBG03681 [Caenorhabditis briggsae] 1.0E-159
blast CAE60135 Hypothetical protein CBG03681 [Caenorhabditis briggsae] 1.0E-154
blast EAA11996 ENSANGP00000016061 [Anopheles gambiae str. PEST] ref|XP_316740.1| ENSANGP00000016061 [Anopheles gambiae str. PEST] 8.0E-68
blast EAA11996 ENSANGP00000016061 [Anopheles gambiae str. PEST] ref|XP_316740.1| ENSANGP00000016061 [Anopheles gambiae str. PEST] 8.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 1.6E-21
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 1.1E-11
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 1.4E-35
Sequence
Target Sequence 
>C. ELEGANS:191237_AT
gtagtctgggtggatccgttggatggaacatcagaagtcgcgttggcagttaagaataag
aatatggcattgttggagcaggtcactgtgttgattggaatcgcgtataagggacgaccg
gtggctggaattattcatcaaccatatcatgagaagcttggaaggacggtttgggcgatt
caaggttgtggagttcatggagttgttccggctactggaaatgctcaaaaaatcgtggtg
acaactcgaagccatctcagcgaatctgtctccaacgccctcgaagctctgaaaactcga
aatttggcggatagcgttgaaaaagtcggtggagccggattcaaggtgctcaaagttctg
gaagggtgtgcagcgtatgtctttgcaagtgctggttgtaagaaatgggacacgtgtgca
gttgaagccgtgttgactgctgctggaggaactcttacggacatttcgggccgtgatatt
cgatatgagcccggtgtgcagcttaataatacgggaggagtactggcgacggcttcatgg
gtcaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTCTGGGTGGATCCGTTGGATG 695 455 355 Antisense
GGCATTGTTGGAGCAGGTCACTGTG 190 535 420 Antisense
GGACGACCGGTGGCTGGAATTATTC 66 525 466 Antisense
GTTCATGGAGTTGTTCCGGCTACTG 686 441 547 Antisense
TGACAACTCGAAGCCATCTCAGCGA 660 571 593 Antisense
ATCTCAGCGAATCTGTCTCCAACGC 101 33 608 Antisense
CGTGTGCAGTTGAAGCCGTGTTGAC 175 245 767 Antisense
TTGACTGCTGCTGGAGGAACTCTTA 409 701 787 Antisense
GAACTCTTACGGACATTTCGGGCCG 436 261 803 Antisense
GATATGAGCCCGGTGTGCAGCTTAA 670 425 836 Antisense
TGGCGACGGCTTCATGGGTCAAGCA 555 543 878 Antisense
Sequence Source Affymetrix Proprietary Database