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[191231_at] 7TM chemoreceptor, srh family

Description C02E7.2 /REP_DB=WormBase Gene ID /WP=CE17362 /GEN=srh-21 /TR=O16433 /GB=AAC24174.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 06      4grp_total > 31      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 64.4
(3)
A 		7.5
(-3)
A 		58.1
(2.3)
A 		8.2
(-2.9)
A 		57
B 72
(3)
A 		15.3
(-2.1)
A 		5.8
(-3)
A 		67.2
(2.6)
A 		66
C 18.1
(1.2)
A 		5.2
(-3)
A 		7
(-2.4)
A 		23.5
(3)
A 		18
avr 51.5
(3) 		9.3
(-3) 		23.6
(-1) 		33
(0.4) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 63
(3)
A 		5
(-3)
A 		45.5
(1.2)
A 		16
(-1.9)
A 		15.5
(-1.9)
A 		14.7
(-2)
A 		58
B 17.8
(-1.7)
A 		10.4
(-2.9)
A 		12.2
(-2.6)
A 		9.5
(-3)
A 		49
(3)
A 		25.6
(-0.6)
A 		40
C 11.3
(-2)
A 		48
(3)
A 		5.5
(-2.8)
A 		9.9
(-2.2)
A 		4.2
(-3)
A 		4.1
(-3)
A 		44
avr 30.7
(3) 		21.1
(-0) 		21.1
(-0) 		11.8
(-3) 		22.9
(0.5) 		14.8
(-2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.4
(3)
A 		1.6
(-2.9)
A 		15.2
(0.8)
A 		1.2
(-3)
A 		22
B 23
(3)
A 		3.8
(-2.3)
A 		1.3
(-3)
A 		14.3
(0.6)
A 		22
C 6
(3)
A 		1.5
(-3)
A 		2.4
(-1.8)
A 		4
(0.3)
A 		5
avr 17.5
(3) 		2.3
(-3) 		6.3
(-1.4) 		6.5
(-1.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.6
(3)
A 		1.8
(-3)
A 		9.9
(2)
A 		4.1
(-1.6)
A 		4.7
(-1.2)
A 		3.6
(-1.9)
A 		10
B 6.2
(-1.7)
A 		3.5
(-2.7)
A 		3
(-2.8)
A 		2.5
(-3)
A 		19.9
(3)
A 		9.6
(-0.6)
A 		17
C 4.2
(-1.7)
A 		14.7
(3)
A 		1.4
(-3)
A 		2
(-2.7)
A 		1.3
(-3)
A 		1.4
(-3)
A 		13
avr 7.3
(1.6) 		6.7
(1) 		4.8
(-1) 		2.9
(-3) 		8.6
(3) 		4.9
(-0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15516
Sequence Type Exemplar sequence
Representative Public ID C02E7.2 NCBI
Target Description C02E7.2 /REP_DB=WormBase Gene ID /WP=CE17362 /GEN=srh-21 /TR=O16433 /GB=AAC24174.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071924 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-21) (srh-21) mRNA, complete cds. 11/11 None
SNAP00000015184 ENSEMBL cdna:SNAP chromosome:CEL140:V:4926874:4927782:1 11/11 None
GENEFINDER00000015198 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4923106:4927782:1 11/11 None
C02E7.2 ENSEMBL cdna:known chromosome:CEL140:V:4926485:4927995:1 gene:C02E7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4926484-4927782(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-21
Ensembl C02E7.2
Entrez Gene 178886 Entrez gene
SwissProt O16433 EMBL-EBI
WormBase CE17362 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-180
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-179
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 1.0E-156
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-141
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 1.0E-125
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 2.0E-98
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 5.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-18
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.7E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504325.1 7 13-35,55-77,92-114,127-149,195-217,246-268,273-295
C02E7.2 7 13-35,55-77,92-114,127-149,195-217,246-268,273-295
SNAP00000015184 5 35-57,70-92,138-160,189-211,216-238
GENEFINDER00000015198 15 13-35,164-186,210-232,239-261,313-335,390-412,427-449,456-478,532-554,574-596,611-633,646-668,714-736,765-787,792-814
Sequence
Target Sequence 
>C. ELEGANS:191231_AT
cacatattttcttcgctttctcgtgtactctacgagatgctttgcgatatttgacttcat
atttccgattgtgacctatcaagatgctaataagttccagcaaattcacaaattagcttt
gctgcagcagaatccttctgctcagtttttaagatgtgattcggtttatcttctttcagc
atttgctgattacgtatcaattattgttttgtcattttggatagtgcaatttgtagttct
ctgtgttgctattcccggtgcaattgtgtacatcaccttaaacataccaaaatccacttc
tgaaactacatggaaagttcaacaacagctattgaaaagtcttgcgattcaagctctgat
tcatgcgatcatgttggggggacccaattcattatttattcttgcattgtttttggggta
taatagcgaagaacttgcgtactctgcgttccttagcttgatttatcacgggtttatctc
aacatttgcaatgatagttttcaccaaaccagttcgccatcatatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATATTTTCTTCGCTTTCTCGTG 199 197 396 Antisense
GTGTACTCTACGAGATGCTTTGCGA 42 487 418 Antisense
GACTTCATATTTCCGATTGTGACCT 565 371 448 Antisense
GAATCCTTCTGCTCAGTTTTTAAGA 164 331 525 Antisense
ATTCGGTTTATCTTCTTTCAGCATT 211 11 554 Antisense
TGTAGTTCTCTGTGTTGCTATTCCC 21 561 627 Antisense
GCTATTCCCGGTGCAATTGTGTACA 109 303 643 Antisense
GATTCAAGCTCTGATTCATGCGATC 373 431 741 Antisense
AGCGAAGAACTTGCGTACTCTGCGT 58 83 820 Antisense
TACTCTGCGTTCCTTAGCTTGATTT 411 645 835 Antisense
CCAAACCAGTTCGCCATCATATTTT 671 275 899 Antisense
Sequence Source Affymetrix Proprietary Database