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[191223_at] serine/threonine kinase

Description ZK507.1 /REP_DB=WormBase Gene ID /WP=CE24727 /TR=SW:P34633 /GB=CAA82367.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 2.7
(-3)
A 		10.2
(-0.7)
A 		4.5
(-2.5)
A 		22.4
(3)
A 		20
B 10.6
(-3)
A 		11
(-2.9)
A 		11.1
(-2.8)
A 		30.5
(3)
A 		20
C 3.9
(-3)
A 		7
(-2.5)
A 		4
(-3)
A 		40.6
(3)
A 		37
avr 5.7
(-3) 		9.4
(-2.1) 		6.5
(-2.8) 		31.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 4.8
(-2.6)
A 		2.4
(-3)
A 		2.1
(-3)
A 		45
(3)
A 		36
(1.7)
A 		28.9
(0.7)
A 		43
B 2.4
(-2.4)
A 		1.5
(-3)
A 		1.7
(-2.9)
A 		4.1
(-1.2)
A 		9.5
(2.5)
A 		10.2
(3)
A 		9
C 21
(0.8)
A 		29.3
(3)
A 		17.3
(-0.2)
A 		8.5
(-2.6)
A 		18.2
(-0)
A 		7.1
(-3)
A 		22
avr 9.4
(-2) 		11.1
(-1.3) 		7
(-3) 		19.2
(2.2) 		21.2
(3) 		15.4
(0.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-3)
A 		2.2
(0.1)
A 		1.2
(-2.5)
A 		3.3
(3)
A 		2
B 3.4
(-1.8)
A 		2.7
(-2.8)
A 		2.6
(-3)
A 		6.5
(3)
A 		4
C 1.3
(-3)
A 		2
(-2.2)
A 		1.4
(-2.9)
A 		6.8
(3)
A 		6
avr 1.9
(-2.7) 		2.3
(-2.1) 		1.7
(-3) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		11.4
(3)
A 		10.9
(2.7)
A 		7
(0.6)
A 		11
B 0.8
(-2.3)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		1.1
(-1.8)
A 		3.8
(3)
A 		3.8
(3)
A 		3
C 7.8
(2.1)
A 		8.9
(3)
A 		4.4
(-0.8)
A 		1.7
(-3)
A 		5.9
(0.5)
A 		2.4
(-2.4)
A 		7
avr 3.2
(-1.4) 		3.4
(-1.1) 		1.8
(-3) 		4.7
(0.4) 		6.9
(3) 		4.4
(0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191223_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6581
Sequence Type Exemplar sequence
Representative Public ID ZK507.1 NCBI
Target Description ZK507.1 /REP_DB=WormBase Gene ID /WP=CE24727 /TR=SW:P34633 /GB=CAA82367.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066614 NCBI Caenorhabditis elegans ZK507.1 (ZK507.1) mRNA, complete cds. 11/11 A 
SNAP00000005916 ENSEMBL cdna:SNAP chromosome:CEL140:III:9099600:9102616:-1 11/11 None
GENEFINDER00000005929 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9099600:9101164:-1 11/11 None
ZK507.1 ENSEMBL cdna:known chromosome:CEL140:III:9099600:9101164:-1 gene:ZK507.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9099595-9101160(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl ZK507.1
Entrez Gene 191336 Entrez gene
SwissProt P34633 EMBL-EBI
WormBase CE24727 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82367 Hypothetical protein ZK507.1 [Caenorhabditis elegans] ref|NP_499015.1| ZK507.1 [Caenorhabditis elegans] sp|P34633|YOO1_CAEEL Putative serine/threonine-protein kinase ZK507.1 0.0
blast CAA82368 Hypothetical protein ZK507.3 [Caenorhabditis elegans] ref|NP_499016.2| ZK507.3 [Caenorhabditis elegans] sp|P34635|YOO3_CAEEL Putative serine/threonine-protein kinase ZK507.3 1.0E-156
blast CAA82368 Hypothetical protein ZK507.3 [Caenorhabditis elegans] ref|NP_499016.2| ZK507.3 [Caenorhabditis elegans] sp|P34635|YOO3_CAEEL Putative serine/threonine-protein kinase ZK507.3 1.0E-150
blast S40735 protein kinase homolog ZK507.1 - Caenorhabditis elegans 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-5
Sequence
Target Sequence 
>C. ELEGANS:191223_AT
gatttccatctacttggacaatttggtctacgattcggaggttaaattcggtgttctgcg
agaagctatcacggactacgctcgaggctgtaagttgactctgaaagaacctttggtttg
gtttaatcaatctacgtgtccatcaccaagtactgctcctggaacgggagcctcgagaat
ggcaaccaatattgatctgaagtcaattgcatcggatcgaaatgaggagaattcgctgga
tcgtagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCCATCTACTTGGACAATTTG 321 427 705 Antisense
CGGAGGTTAAATTCGGTGTTCTGCG 51 77 740 Antisense
GTTCTGCGAGAAGCTATCACGGACT 136 443 757 Antisense
GGACTACGCTCGAGGCTGTAAGTTG 495 517 777 Antisense
GCTCGAGGCTGTAAGTTGACTCTGA 590 299 784 Antisense
TTAATCAATCTACGTGTCCATCACC 36 683 827 Antisense
TCCATCACCAAGTACTGCTCCTGGA 566 591 843 Antisense
ACTGCTCCTGGAACGGGAGCCTCGA 517 95 856 Antisense
GGGAGCCTCGAGAATGGCAACCAAT 182 495 870 Antisense
TGATCTGAAGTCAATTGCATCGGAT 162 565 897 Antisense
GAGGAGAATTCGCTGGATCGTAGTA 485 403 928 Antisense
Sequence Source Affymetrix Proprietary Database