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[191222_at] 7TM chemoreceptor, srd family /// 7TM chemoreceptor, srd family

Description C01B4.5 /REP_DB=WormBase Gene ID /WP=CE24773 /GEN=srd-61 /TR=Q9UAT7 /GB=AAD14697.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 21      4grp_total > 38      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 62.1
(3)
A 		34.8
(0.1)
A 		5.6
(-3)
A 		44.8
(1.2)
A 		57
B 121.2
(3)
A 		4.8
(-3)
A 		19.6
(-2.2)
A 		22.5
(-2.1)
A 		116
C 79.5
(2.3)
A 		71.7
(1.8)
A 		5.3
(-3)
A 		88.8
(3)
P 		84
avr 87.6
(3) 		37.1
(-0.9) 		10.2
(-3) 		52
(0.2) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 17.2
(-2.6)
A 		82
(2.4)
A 		90.4
(3)
A 		52.2
(0.1)
A 		52.3
(0.1)
A 		11.5
(-3)
A 		79
B 70.4
(2.2)
A 		64.2
(1.1)
A 		55.9
(-0.2)
A 		75.4
(3)
A 		39.3
(-3)
A 		42.9
(-2.4)
A 		36
C 77
(0.2)
A 		91.1
(1.3)
A 		113.8
(3)
A 		33.6
(-3)
A 		39.9
(-2.5)
A 		47.6
(-2)
A 		80
avr 54.9
(-0.6) 		79.1
(2.1) 		86.7
(3) 		53.7
(-0.8) 		43.8
(-1.9) 		34
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 22.6
(3)
A 		7.6
(-1.3)
A 		1.5
(-3)
A 		6.6
(-1.5)
A 		21
B 38.7
(3)
A 		1.2
(-3)
A 		4.5
(-2.5)
A 		4.8
(-2.4)
A 		38
C 26.3
(3)
A 		20.6
(1.6)
A 		1.8
(-3)
A 		15
(0.2)
P 		25
avr 29.2
(3) 		9.8
(-1.4) 		2.6
(-3) 		8.8
(-1.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.2
(-2.9)
A 		29.1
(3)
A 		19.7
(0.9)
A 		13.2
(-0.6)
A 		15.8
(-0)
A 		2.8
(-3)
A 		26
B 24.5
(3)
A 		21.4
(1.3)
A 		13.6
(-3)
A 		20
(0.5)
A 		16
(-1.7)
A 		16
(-1.7)
A 		11
C 28.5
(2.9)
A 		27.8
(2.7)
A 		29
(3)
A 		6.8
(-3)
A 		12.9
(-1.4)
A 		15.9
(-0.5)
A 		22
avr 18.7
(-0.1) 		26.1
(3) 		20.8
(0.8) 		13.3
(-2.3) 		14.9
(-1.6) 		11.6
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15106
Sequence Type Exemplar sequence
Representative Public ID C01B4.5 NCBI
Target Description C01B4.5 /REP_DB=WormBase Gene ID /WP=CE24773 /GEN=srd-61 /TR=Q9UAT7 /GB=AAD14697.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071284(11), NM_001029050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071284 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-61) (srd-61) mRNA, complete cds. 11/11 None
NM_001029050 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-75) (srd-75) mRNA, complete cds. 11/11 None
Y19D10A.15 ENSEMBL cdna:known chromosome:CEL140:V:2394313:2396463:1 gene:Y19D10A.15 11/11 None
C01B4.5 ENSEMBL cdna:known chromosome:CEL140:V:2502592:2504742:1 gene:C01B4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008433 2/11 Cross Hyb Matching Probes None
GENEFINDER00000008437 8/11 Cross Hyb Matching Probes None
SNAP00000029974 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029978 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2394312-2396463(+) 100.0 100.0
chrV:2502591-2504742(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
7TM chemoreceptor, srd family
Gene Symbol srd-61
srd-75
Ensembl Y19D10A.15
C01B4.5
Entrez Gene 191822 Entrez gene
3565207 Entrez gene
SwissProt Q9UAT7 EMBL-EBI
WormBase CE24773 Wormbase
CE24773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14697 Serpentine receptor, class d (delta) protein 61 [Caenorhabditis elegans] ref|NP_001024221.1| Serpentine Receptor, class D (delta) family member (srd-75) [Caenorhabditis elegans] ref|NP_503685.1| Serpentine Receptor, class D (delta) family member (srd-61) [Caenorhabditis elegans] gb|AAW88389.1| Hypothetical protein Y19D10A.15 [Caenorhabditis elegans] 1.0E-176
blast CAE58049 Hypothetical protein CBG01126 [Caenorhabditis briggsae] 2.0E-79
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 5.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503685.1 7 10-32,45-67,87-109,130-152,186-208,235-257,272-294
NP_001024221.1 7 10-32,45-67,87-109,130-152,186-208,235-257,272-294
Y19D10A.15 7 10-32,45-67,87-109,130-152,186-208,235-257,272-294
C01B4.5 7 10-32,45-67,87-109,130-152,186-208,235-257,272-294
Sequence
Target Sequence 
>C. ELEGANS:191222_AT
taatcgggcatcgctgaagttctcgctgcattatttgataccgatgaccccacttattct
cacctactttgccccaataaaccacgcagatgtctacatggaaaccctgaacctacaccc
aaactacaactttgaaccttataaaaatttcggtggattcgccaattcccatcatttttg
tatgaatttcaacacagcgatttatgcatttaatacaatttattttccaataattggcaa
ttattggaagcgtattgctatgaaaattctcaaatctagcatttcaacggcatcatcgaa
atcgacacgagttatgagtgaactgttggttaagggccttaatcttcaagtactcttacc
acttatctgctatgttcctatcagtatacttttttgctggaataaatattctggacaaca
aatcgagatatcacagtattcgatcgcgtttttcggcactcttccttgttttttcgatcc
actgctccaaatctatttcatactaccctatcggtctgcggtccggagattaattttctg
tggctgctcagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCGGGCATCGCTGAAGTTCTCG 443 635 390 Antisense
ATTATTTGATACCGATGACCCCACT 381 13 419 Antisense
TACTTTGCCCCAATAAACCACGCAG 625 643 454 Antisense
TACATGGAAACCCTGAACCTACACC 85 639 484 Antisense
TTTCGGTGGATTCGCCAATTCCCAT 468 671 537 Antisense
ATCTAGCATTTCAACGGCATCATCG 134 33 663 Antisense
AGGGCCTTAATCTTCAAGTACTCTT 374 53 722 Antisense
TACTCTTACCACTTATCTGCTATGT 241 647 740 Antisense
ATCTATTTCATACTACCCTATCGGT 514 31 880 Antisense
CTATCGGTCTGCGGTCCGGAGATTA 675 223 897 Antisense
TTAATTTTCTGTGGCTGCTCAGCAC 370 685 919 Antisense
Sequence Source Affymetrix Proprietary Database