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[191219_at] WD domain, G-beta repeat

Description Y41C4A.11 /REP_DB=WormBase Gene ID /WP=CE20251 /TR=Q9XWU3 /GB=CAA21549.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster 6grp_total > 29      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 22.8
(-1)
A 		56.2
(3)
A 		54.8
(2.8)
A 		5.7
(-3)
A 		51
B 12.9
(-2.4)
A 		81
(3)
A 		42.7
(-0)
A 		5.4
(-3)
A 		76
C 42
(1.8)
A 		48.9
(3)
A 		29
(-0.4)
A 		13.4
(-3)
A 		36
avr 25.9
(-1) 		62
(3) 		42.2
(0.8) 		8.2
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 159.5
(3)
A 		118.2
(1.2)
A 		71.5
(-0.9)
A 		25.3
(-3)
A 		123
(1.4)
A 		75.5
(-0.8)
A 		134
B 142
(3)
P 		59.3
(-1)
A 		32.6
(-2.2)
A 		72.9
(-0.3)
A 		88.1
(0.4)
M 		16.7
(-3)
A 		125
C 118.9
(3)
P 		73.9
(0.3)
A 		39.4
(-1.7)
A 		22.6
(-2.7)
A 		102.5
(2)
A 		18.3
(-3)
A 		101
avr 140.1
(3) 		83.8
(-0.3) 		47.8
(-2.4) 		40.3
(-2.8) 		104.5
(0.9) 		36.8
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 8.3
(0.3)
A 		12.2
(2.1)
A 		14.3
(3)
A 		0.8
(-3)
A 		14
B 4.1
(-2.1)
A 		20
(3)
A 		9.9
(-0.2)
A 		1.2
(-3)
A 		19
C 13.9
(2.9)
A 		14.1
(3)
A 		10.1
(1)
A 		2.3
(-3)
A 		12
avr 8.8
(0.2) 		15.4
(3) 		11.4
(1.3) 		1.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 29.4
(0.9)
A 		42
(3)
A 		15.6
(-1.4)
A 		6.4
(-3)
A 		37.1
(2.2)
A 		18.4
(-1)
A 		36
B 49.4
(3)
P 		19.7
(-1.1)
A 		7.9
(-2.8)
A 		19.3
(-1.2)
A 		35.8
(1.1)
M 		6.2
(-3)
A 		43
C 44.1
(3)
P 		22.6
(-0.3)
A 		10
(-2.2)
A 		4.5
(-3)
A 		33.2
(1.3)
A 		6.1
(-2.8)
A 		40
avr 41
(3) 		28.1
(0.5) 		11.2
(-2.8) 		10.1
(-3) 		35.4
(1.9) 		10.2
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6032
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.11 NCBI
Target Description Y41C4A.11 /REP_DB=WormBase Gene ID /WP=CE20251 /TR=Q9XWU3 /GB=CAA21549.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067117 NCBI Caenorhabditis elegans Y41C4A.11 (Y41C4A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000034915 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11719776:11723389:1 11/11 None
SNAP00000034893 ENSEMBL cdna:SNAP chromosome:CEL140:III:11720699:11731154:1 11/11 None
Y41C4A.11 ENSEMBL cdna:known chromosome:CEL140:III:11719776:11723389:1 gene:Y41C4A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11719771-11723385(+) 100.0 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeat
Ensembl Y41C4A.11
Entrez Gene 189814 Entrez gene
SwissProt Q9XWU3 EMBL-EBI
WormBase CE20251 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21549 Hypothetical protein Y41C4A.11 [Caenorhabditis elegans] ref|NP_499518.1| Y41C4A.11 [Caenorhabditis elegans] 0.0
blast CAE67672 Hypothetical protein CBG13235 [Caenorhabditis briggsae] 1.0E-103
blast CAE74018 Hypothetical protein CBG21666 [Caenorhabditis briggsae] 7.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499518.1 1 54-76
Y41C4A.11 1 54-76
GENEFINDER00000034915 1 54-76
SNAP00000034893 2 7-29,341-363
Sequence
Target Sequence 
>C. ELEGANS:191219_AT
atcaacgagttcacagctcactctgactttattcgctccctaaccgtgcacccgacactt
ccctacctcatatcggcttccgacgatcgtaagatccgagtttgggattgggaaaacgag
tggagaatggagcaggaattccaggagcatgctcattatatcatgcaaattgccgtgaac
cctgaagacccggagatgtttgtcagtggatcgttggataaaactttgaaagtctggaag
ctcggtgagcaagagtcgatttgcactctggagggtcatgagaagggggtgaattgtgtg
gagtttctgaccggtgggagaattgtttcgggctccgatgattgctcaatttgtgtttgg
gatattcagacccaaaaatgcattgaaactctaaaaaatgctcacaaaaacaacgttacc
tttgtcaccccattcaagacatggattatctccggagccgaggattctactgtaaaaatt
tggaattcgcagactttctcattggaaaaggagttgaattttgagaagggaagagcttgg
tgtgtggctgctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACGAGTTCACAGCTCACTCTG 101 27 562 Antisense
CAGCTCACTCTGACTTTATTCGCTC 698 203 575 Antisense
TCGGCTTCCGACGATCGTAAGATCC 165 597 634 Antisense
GCAAATTGCCGTGAACCCTGAAGAC 187 317 726 Antisense
GTCGATTTGCACTCTGGAGGGTCAT 91 471 816 Antisense
ATTGTGTGGAGTTTCTGACCGGTGG 210 5 854 Antisense
TGTTTCGGGCTCCGATGATTGCTCA 292 561 885 Antisense
GACATGGATTATCTCCGGAGCCGAG 699 367 999 Antisense
CGGAGCCGAGGATTCTACTGTAAAA 254 243 1014 Antisense
GGAATTCGCAGACTTTCTCATTGGA 631 533 1043 Antisense
AAGAGCTTGGTGTGTGGCTGCTGGA 447 153 1092 Antisense
Sequence Source Affymetrix Proprietary Database