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[191217_s_at] Serine protease inhibitor

Description F30H5.3 /REP_DB=WormBase Gene ID /WP=CE01927 /TR=Q09983 /GB=AAA68408.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Serine protease inhibitor
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      6grp_highest_nonorm > 61      6grp_total > 0      4grp_total > 49      6grp_highest_sub > 02      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1642
1 2 3 4 range
A 41.4
(-3)
A 		1675.7
(3)
P 		1115.8
(0.9)
P 		95.5
(-2.8)
A 		1634
B 52
(-3)
A 		1432.2
(3)
P 		1291.7
(2.4)
P 		70.7
(-2.9)
A 		1380
C 34.1
(-3)
A 		1432.5
(3)
P 		1124.6
(1.7)
P 		67.6
(-2.9)
A 		1398
avr 42.5
(-3) 		1513.5
(3) 		1177.4
(1.6) 		77.9
(-2.9) 		1471

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 963
1 2 3 4 5 6 range
A 166.8
(-3)
P 		1122.8
(3)
P 		230.4
(-2.6)
P 		435.5
(-1.3)
P 		333.2
(-2)
P 		232.7
(-2.6)
P 		956
B 193.5
(-2.9)
P 		793.1
(3)
P 		269.1
(-2.2)
P 		332.5
(-1.6)
P 		304.7
(-1.8)
P 		187.3
(-3)
P 		606
C 269.9
(-2)
P 		813.8
(3)
P 		446.9
(-0.4)
P 		276.8
(-1.9)
P 		523.1
(0.3)
P 		160
(-3)
P 		654
avr 210.1
(-2.9) 		909.9
(3) 		315.5
(-2) 		348.3
(-1.7) 		387
(-1.4) 		193.3
(-3) 		717
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 15.1
(-3)
A 		363.8
(3)
P 		291.7
(1.8)
P 		14
(-3)
A 		350
B 16.6
(-3)
A 		353.7
(3)
P 		299.3
(2)
P 		15.1
(-3)
A 		339
C 11.3
(-3)
A 		411.9
(3)
P 		392
(2.7)
P 		11.4
(-3)
A 		401
avr 14.3
(-3) 		376.5
(3) 		327.7
(2.2) 		13.5
(-3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 30.7
(-3)
P 		399.3
(3)
P 		50.2
(-2.7)
P 		110.5
(-1.7)
P 		100.5
(-1.9)
P 		56.7
(-2.6)
P 		369
B 67.3
(-2.9)
P 		264
(3)
P 		65.3
(-3)
P 		88.1
(-2.3)
P 		123.8
(-1.2)
P 		69.8
(-2.9)
P 		199
C 100
(-1.6)
P 		248.3
(3)
P 		113.7
(-1.1)
P 		55.7
(-2.9)
P 		169.3
(0.6)
P 		53.5
(-3)
P 		195
avr 66
(-2.9) 		303.9
(3) 		76.4
(-2.6) 		84.8
(-2.4) 		131.2
(-1.2) 		60
(-3) 		244
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191217_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8193
Sequence Type Exemplar sequence
Representative Public ID F30H5.3 NCBI
Target Description F30H5.3 /REP_DB=WormBase Gene ID /WP=CE01927 /TR=Q09983 /GB=AAA68408.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Serine protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064805 NCBI Caenorhabditis elegans F30H5.3 (F30H5.3) mRNA, complete cds. 11/11 None
SNAP00000018215 ENSEMBL cdna:SNAP chromosome:CEL140:III:505501:511915:-1 11/11 None
GENEFINDER00000018218 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:505501:510831:-1 11/11 None
F30H5.3 ENSEMBL cdna:known chromosome:CEL140:III:505235:512173:-1 gene:F30H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:505500-511915(-) 100.0 100.0
Public Domain and Genome References
Gene Title Serine protease inhibitor
Ensembl F30H5.3
Entrez Gene 175207 Entrez gene
SwissProt Q09983 EMBL-EBI
WormBase CE01927 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497206 F30H5.3 [Caenorhabditis elegans] gb|AAA68408.1| Hypothetical protein F30H5.3 [Caenorhabditis elegans] 0.0
blast CAE69239 Hypothetical protein CBG15282 [Caenorhabditis briggsae] 0.0
blast CAE62775 Hypothetical protein CBG06944 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.6E-31
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.6E-24
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.6E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-7
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.7E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.5E-29
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.4E-29
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.6E-31
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.6E-24
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.6E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-7
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.7E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.5E-29
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.4E-29
Sequence
Target Sequence 
>C. ELEGANS:191217_S_AT
gaagccgctgacgtttgtgatcgtggaagcgcatacgttgtgaatgggacaccaaaacaa
tgtacagcatctccatgcccaagtggatacaagtgcacattctcgaagaagagcaagaac
tactactgctgctcatcgaaggcttctccgggatcctcgtctggatccggagcagccaac
ggctgtgccactggaagtgccctgctcttcccatcaaccggtacgccagttcagtgctcc
aacagtggatcaaacagttgtccagccggatacaaatgccagaagagcacgttgtcgaac
cgattccagtgttgctcaagtgtcagtggaggtggagatggagaagaagaggagacggct
ccagttagaggacgtccggttgttggaggtcgtggatctgtgaacaagaacaaggaatcg
gcggctaatggcccatgctcaaacggtcaggtgcaagttctccgaatcgtcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGCTGACGTTTGTGATCGTG 98 345 4228 Antisense
AGCATCTCCATGCCCAAGTGGATAC 130 79 4293 Antisense
TACTACTGCTGCTCATCGAAGGCTT 575 643 4348 Antisense
TCCGGGATCCTCGTCTGGATCCGGA 80 595 4374 Antisense
CAACGGCTGTGCCACTGGAAGTGCC 626 187 4404 Antisense
AGAGCACGTTGTCGAACCGATTCCA 458 69 4511 Antisense
ACCGATTCCAGTGTTGCTCAAGTGT 254 89 4526 Antisense
GGCTCCAGTTAGAGGACGTCCGGTT 291 457 4584 Antisense
AAGGAATCGGCGGCTAATGGCCCAT 413 159 4639 Antisense
GCCCATGCTCAAACGGTCAGGTGCA 129 287 4658 Antisense
GGTGCAAGTTCTCCGAATCGTCGGA 531 501 4677 Antisense
Sequence Source Affymetrix Proprietary Database