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[191216_s_at]

Description C07G2.2A /REP_DB=WormBase Gene ID /WP=CE19687 /TR=Q9U3R1 /GB=CAB63430.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=bZIP transcription factor
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 20      6grp_total > 16      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1159
1 2 3 4 range
A 1804.2
(3)
P 		803.5
(-3)
P 		844.3
(-2.8)
P 		1114.8
(-1.1)
P 		1001
B 1767.7
(3)
P 		868.5
(-3)
P 		970.7
(-2.3)
P 		1070.4
(-1.7)
P 		899
C 1962
(3)
P 		1071.6
(-2)
P 		893.1
(-3)
P 		942.9
(-2.7)
P 		1069
avr 1844.6
(3) 		914.5
(-2.9) 		902.7
(-3) 		1042.7
(-2.1) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1076
1 2 3 4 5 6 range
A 1304.2
(2.5)
P 		1343.4
(3)
P 		988
(-1.1)
P 		861.7
(-2.6)
P 		902.6
(-2.1)
P 		829
(-3)
P 		514
B 1445.6
(3)
P 		1250.2
(1.1)
P 		1017.1
(-1.3)
P 		906.3
(-2.4)
P 		843.9
(-3)
P 		1023.5
(-1.2)
P 		602
C 1905
(3)
P 		1166.2
(-1.7)
P 		956.2
(-3)
P 		973.4
(-2.9)
P 		1023.8
(-2.6)
P 		1058.5
(-2.4)
P 		949
avr 1551.6
(3) 		1253.3
(0.2) 		987.1
(-2.3) 		913.8
(-3) 		923.4
(-2.9) 		970.3
(-2.5) 		638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 498
1 2 3 4 range
A 656.9
(3)
P 		174.4
(-2.9)
P 		220.7
(-2.3)
P 		163.2
(-3)
P 		494
B 563.7
(3)
P 		214.5
(-3)
P 		224.9
(-2.8)
P 		228.1
(-2.8)
P 		349
C 649.5
(3)
P 		308.1
(-1.2)
P 		311.3
(-1.1)
P 		159
(-3)
P 		491
avr 623.4
(3) 		232.3
(-2.3) 		252.3
(-2.1) 		183.4
(-3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 240.4
(-2.2)
P 		477.8
(3)
P 		215.2
(-2.7)
P 		218.6
(-2.6)
P 		272.4
(-1.5)
P 		201.8
(-3)
P 		276
B 503
(3)
P 		416.1
(1)
P 		247
(-2.8)
P 		240
(-3)
P 		342.9
(-0.7)
P 		381.7
(0.2)
P 		263
C 706.1
(3)
P 		355.8
(-1.1)
P 		243.4
(-2.4)
P 		195.8
(-3)
P 		331.3
(-1.4)
P 		354.3
(-1.1)
P 		510
avr 483.2
(3) 		416.6
(1.5) 		235.2
(-2.6) 		218.1
(-3) 		315.5
(-0.8) 		312.6
(-0.9) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191216_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7634
Sequence Type Exemplar sequence
Representative Public ID C07G2.2A NCBI
Target Description C07G2.2A /REP_DB=WormBase Gene ID /WP=CE19687 /TR=Q9U3R1 /GB=CAB63430.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=bZIP transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065513(11), NM_001025990(11), NM_065512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065513 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 A 
NM_001025990 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 None
NM_065512 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 A 
SNAP00000003823 ENSEMBL cdna:SNAP chromosome:CEL140:III:4492272:4494386:-1 11/11 None
GENEFINDER00000003826 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4492272:4501475:-1 11/11 None
C07G2.2a.3 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499447:-1 gene:C07G2.2 11/11 A 
C07G2.2a.4 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499094:-1 gene:C07G2.2 11/11 None
C07G2.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499009:-1 gene:C07G2.2 11/11 A 
C07G2.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499011:-1 gene:C07G2.2 11/11 A 
C07G2.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:4491668:4494416:-1 gene:C07G2.2 11/11 None
C07G2.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:4491668:4494442:-1 gene:C07G2.2 11/11 None
C07G2.2b ENSEMBL cdna:known chromosome:CEL140:III:4492272:4498501:-1 gene:C07G2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4492271-4494046(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63430 Hypothetical protein C07G2.2a [Caenorhabditis elegans] ref|NP_497914.2| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
blast CAA83680 Hypothetical protein C07G2.2b [Caenorhabditis elegans] ref|NP_497913.1| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
blast CAD88215 Hypothetical protein C07G2.2c [Caenorhabditis elegans] ref|NP_001021161.1| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191216_S_AT
tatgtcatcttcgggatctgatcaagatcagtctgcagatatgtcaaatgctggatcaac
tgcttcaacgagtactggaaatccagttggacgtccacaaaacggtacacctggccgtgg
acgtggtcgaggaagaagcacaacagccgacatgcaacccgacgagaggaggaatacaat
tctcgagagaaataaggctgcggctgtgagatatcgtaagaggaagaaggaagaacatga
tgatatgatgggaagagttcaagcaatggaggctgaaaagaatcaattactgacacaaaa
tcaagtgctgcgacgggaactcgaaagggtaactgcgttgcttactgaaagagagtcacg
atgcgtttgtctgaaaggagttccaatgagtgatgagcagcacgctgatcatcatcatcg
aaacacgaatggaatgtactctggatcagatatgctcaatggacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTCATCTTCGGGATCTGATCAA 676 655 819 Antisense
GGACGTCCACAAAACGGTACACCTG 445 523 907 Antisense
GAAGCACAACAGCCGACATGCAACC 307 341 953 Antisense
GACATGCAACCCGACGAGAGGAGGA 311 367 967 Antisense
AAGGCTGCGGCTGTGAGATATCGTA 398 161 1012 Antisense
ATCAAGTGCTGCGACGGGAACTCGA 595 25 1118 Antisense
AAGGGTAACTGCGTTGCTTACTGAA 604 159 1143 Antisense
GAGAGTCACGATGCGTTTGTCTGAA 139 395 1169 Antisense
TGAGCAGCACGCTGATCATCATCAT 464 569 1212 Antisense
GAATGGAATGTACTCTGGATCAGAT 455 333 1245 Antisense
GGATCAGATATGCTCAATGGACTTG 568 511 1261 Antisense
Sequence Source Affymetrix Proprietary Database