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[191215_at] 7TM chemoreceptor, str family

Description F07C3.8 /REP_DB=WormBase Gene ID /WP=CE25850 /GEN=str-94 /TR=Q9GS14 /GB=AAG24033.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 73      4grp_total > 09      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 3.3
(-3)
A 		28.2
(-0.9)
A 		36.6
(-0.2)
A 		73.5
(3)
A 		70
B 5.5
(-2.7)
A 		3.7
(-2.9)
A 		1.2
(-3)
A 		104.3
(3)
P 		103
C 4.1
(-2.9)
A 		3
(-3)
A 		2.9
(-3)
A 		84.8
(3)
P 		82
avr 4.3
(-3) 		11.6
(-2.5) 		13.6
(-2.3) 		87.5
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		3.3
(-2.9)
A 		27.9
(3)
A 		10.3
(-1.2)
A 		5.6
(-2.3)
A 		2.8
(-3)
A 		25
B 2.5
(-3)
A 		7.5
(-1.6)
A 		24.6
(3)
A 		11.7
(-0.5)
A 		13.1
(-0.1)
A 		17.5
(1.1)
A 		22
C 2.3
(-3)
A 		9.2
(-1.6)
A 		2.2
(-3)
A 		31.4
(3)
A 		15.2
(-0.3)
A 		8.8
(-1.6)
A 		29
avr 2.7
(-3) 		6.7
(-1.5) 		18.2
(3) 		17.8
(2.8) 		11.3
(0.3) 		9.7
(-0.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.2
(-3)
A 		6.1
(0.1)
A 		9.6
(2.3)
A 		10.8
(3)
A 		10
B 1.8
(-2.6)
A 		0.9
(-2.8)
A 		0.3
(-3)
A 		22.2
(3)
P 		22
C 1.4
(-2.8)
A 		0.9
(-3)
A 		1
(-3)
A 		14.3
(3)
P 		13
avr 1.5
(-3) 		2.6
(-2.5) 		3.6
(-2.1) 		15.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.3)
A 		6.1
(3)
A 		2.6
(-0.8)
A 		1.7
(-1.8)
A 		0.7
(-2.9)
A 		6
B 0.9
(-3)
A 		2.5
(-1.3)
A 		6
(2.5)
A 		3.1
(-0.6)
A 		5.3
(1.7)
A 		6.5
(3)
A 		6
C 0.8
(-2.8)
A 		2.8
(-0.7)
A 		0.6
(-3)
A 		6.3
(3)
A 		4.9
(1.5)
A 		3
(-0.5)
A 		6
avr 0.8
(-3) 		2.2
(-0.5) 		4.2
(3) 		4
(2.6) 		4
(2.6) 		3.4
(1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12318
Sequence Type Exemplar sequence
Representative Public ID F07C3.8 NCBI
Target Description F07C3.8 /REP_DB=WormBase Gene ID /WP=CE25850 /GEN=str-94 /TR=Q9GS14 /GB=AAG24033.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072994(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072994 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-94) (str-94) mRNA, complete cds. 9/11 None
GENEFINDER00000009722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9250616:9251891:-1 11/11 None
F07C3.8 ENSEMBL cdna:known chromosome:CEL140:V:9250616:9251891:-1 gene:F07C3.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009708 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9250615-9251891(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-94
Ensembl F07C3.8
Entrez Gene 191996 Entrez gene
SwissProt Q9GS14 EMBL-EBI
WormBase CE35271 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505395 Seven TM Receptor family member (str-94) [Caenorhabditis elegans] gb|AAG24033.2| Seven tm receptor protein 94 [Caenorhabditis elegans] 1.0E-161
blast CAE72140 Hypothetical protein CBG19238 [Caenorhabditis briggsae] 1.0E-146
blast NP_505395 Seven TM Receptor family member (str-94) [Caenorhabditis elegans] gb|AAG24033.2| Seven tm receptor protein 94 [Caenorhabditis elegans] 1.0E-145
blast CAE72140 Hypothetical protein CBG19238 [Caenorhabditis briggsae] 1.0E-116
blast T28819 hypothetical protein F07C3.8 - Caenorhabditis elegans 4.0E-84
blast NP_504025 Seven TM Receptor family member (str-113) [Caenorhabditis elegans] gb|AAD14741.1| Seven tm receptor protein 113 [Caenorhabditis elegans] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-31
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-30
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505395.2 5 10-30,43-65,85-107,150-172,200-222
F07C3.8 5 10-30,43-65,85-107,150-172,200-222
GENEFINDER00000009722 7 10-30,43-65,89-111,131-153,203-225,246-268,273-295
Sequence
Target Sequence 
>C. ELEGANS:191215_AT
aattctcgcagtattttggtggtgtaatgtatttttcttattgagtagtaatccaacatt
caatttttacttgaaagatacaattcgtgagaactatgaagaaaacattgaacgtctttc
ttacattggtccattgtattttattgtcggatctcaaggcgaaattcaaattcaatggaa
aagttgtttggcaatgaccaatgtatattgcattgcaataactactcttgttacaataat
gtctctgggctattctatatatataaagatgcagtcagttaacgacatggtagcagaaaa
gacacgagcacttcaaaggcaactgttccatgcacttgtacttcagacaattgttccaat
catctttatgtacactccaacaacgatcctattcttatgccctataattggtgttgagct
aggaatgattgcaaacatgacttcagtttgtttggctctataccctgctttagatccttt
agttgttatgtacttcattaaagactaccgcagttatttgctcaaaaaaatgaatatttc
gaaaaaagtatcaacagtgaccggagcaacttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCGCAGTATTTTGGTGGTGT 402 177 426 Antisense
TGAACGTCTTTCTTACATTGGTCCA 69 575 534 Antisense
TAATGTCTCTGGGCTATTCTATATA 30 637 662 Antisense
GTTCCATGCACTTGTACTTCAGACA 185 441 750 Antisense
GTTCCAATCATCTTTATGTACACTC 328 441 778 Antisense
TACACTCCAACAACGATCCTATTCT 164 643 796 Antisense
GATCCTATTCTTATGCCCTATAATT 7 417 810 Antisense
CAGTTTGTTTGGCTCTATACCCTGC 556 201 869 Antisense
TATACCCTGCTTTAGATCCTTTAGT 355 661 884 Antisense
AAGACTACCGCAGTTATTTGCTCAA 531 153 926 Antisense
ATCAACAGTGACCGGAGCAACTTCC 90 27 975 Antisense
Sequence Source Affymetrix Proprietary Database