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[191214_at] 7TM chemoreceptor, srh family

Description C04F2.1 /REP_DB=WormBase Gene ID /WP=CE17367 /GEN=srh-79 /TR=O76661 /GB=AAC26911.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 05      4grp_total > 05      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 78.2
(0.6)
A 		13.8
(-3)
A 		13.8
(-3)
A 		119.7
(3)
A 		106
B 54.2
(0.4)
A 		12.1
(-3)
A 		41.3
(-0.6)
A 		86.2
(3)
A 		74
C 62.9
(-1)
A 		38.6
(-1.9)
A 		8.8
(-3)
A 		172.1
(3)
P 		163
avr 65.1
(-0.5) 		21.5
(-3) 		21.3
(-3) 		126
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 114.6
(3)
A 		8.7
(-2.9)
A 		44.9
(-0.9)
A 		47.6
(-0.8)
A 		73.3
(0.7)
A 		7.8
(-3)
A 		107
B 81.2
(3)
A 		35.8
(-0.6)
A 		69.7
(2.1)
A 		9.2
(-2.7)
A 		71.2
(2.2)
A 		5.5
(-3)
A 		76
C 7.1
(-2.9)
A 		101.1
(3)
A 		8.8
(-2.8)
A 		11.5
(-2.6)
A 		5
(-3)
A 		6.6
(-2.9)
A 		96
avr 67.6
(3) 		48.5
(1.1) 		41.1
(0.4) 		22.8
(-1.4) 		49.8
(1.2) 		6.6
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28.5
(3)
A 		3
(-3)
A 		3.6
(-2.9)
A 		17.5
(0.4)
A 		26
B 17.3
(2.6)
A 		3
(-3)
A 		9.6
(-0.4)
A 		18.4
(3)
A 		15
C 20.8
(1.1)
A 		11.1
(-1.1)
A 		3.1
(-3)
A 		29
(3)
P 		26
avr 22.2
(3) 		5.7
(-2.9) 		5.4
(-3) 		21.6
(2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 21.1
(2.7)
A 		3.1
(-2.6)
A 		9.8
(-0.7)
A 		12.1
(0)
A 		22.1
(3)
A 		1.9
(-3)
A 		20
B 28.3
(2.9)
A 		11.9
(-0.8)
A 		16.9
(0.3)
A 		2.4
(-2.9)
A 		28.9
(3)
A 		2.1
(-3)
A 		27
C 2.6
(-2.8)
A 		30.9
(3)
A 		2.2
(-2.9)
A 		2.3
(-2.9)
A 		1.6
(-3)
A 		2.2
(-2.9)
A 		29
avr 17.3
(2.9) 		15.3
(2.1) 		9.6
(-0.1) 		5.6
(-1.6) 		17.5
(3) 		2.1
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11642
Sequence Type Exemplar sequence
Representative Public ID C04F2.1 NCBI
Target Description C04F2.1 /REP_DB=WormBase Gene ID /WP=CE17367 /GEN=srh-79 /TR=O76661 /GB=AAC26911.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072529 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-79) (srh-79) mRNA, complete cds. 11/11 None
GENEFINDER00000022595 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7499747:7501647:1 11/11 None
C04F2.1 ENSEMBL cdna:known chromosome:CEL140:V:7500332:7501647:1 gene:C04F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7500332-7501648(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-79
Ensembl C04F2.1
Entrez Gene 191873 Entrez gene
SwissProt O76661 EMBL-EBI
WormBase CE17367 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26911 Serpentine receptor, class h protein 79 [Caenorhabditis elegans] ref|NP_504930.1| Serpentine Receptor, class H family member (srh-79) [Caenorhabditis elegans] 0.0
blast AAC26911 Serpentine receptor, class h protein 79 [Caenorhabditis elegans] ref|NP_504930.1| Serpentine Receptor, class H family member (srh-79) [Caenorhabditis elegans] 1.0E-146
blast CAE73657 Hypothetical protein CBG21163 [Caenorhabditis briggsae] 1.0E-136
blast NP_503144 Serpentine Receptor, class H family member (srh-82) [Caenorhabditis elegans] gb|AAG24203.1| Serpentine receptor, class h protein 82 [Caenorhabditis elegans] 1.0E-110
blast CAE73657 Hypothetical protein CBG21163 [Caenorhabditis briggsae] 7.0E-99
blast NP_503144 Serpentine Receptor, class H family member (srh-82) [Caenorhabditis elegans] gb|AAG24203.1| Serpentine receptor, class h protein 82 [Caenorhabditis elegans] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504930.1 7 29-51,70-92,107-129,150-172,208-242,255-277,292-314
C04F2.1 7 29-51,70-92,107-129,150-172,208-242,255-277,292-314
GENEFINDER00000022595 6 27-49,64-86,107-129,165-199,212-234,249-271
Sequence
Target Sequence 
>C. ELEGANS:191214_AT
aattcatatattactctgcccgtgttcttattgcagtttcattctccatgctaatatttc
aatttgtacctgaagaccaatcttccgcgcttttccaaattttgaagtcaatcccctgtc
ctaccgaggagttttttacggcctccgggatgttcgttctagtgattgacgagacgtata
tcaatttgttggcaattgcatgtgtattaggagtgtcttttgaaattttgcaaatgatat
tctttattatttgctgcttgcattacctgtactttgctataaatggatttacgtcgaaga
aaactaggaagttgcaaattgcattttttgggagtatcatgcttcaagtatccattccaa
tactcttcttattgcccagttttgtttttctggttttttcggtagtttcggggtattata
atcaagcgctaaccaatttttcggttgtttatgcctcgatccatggattactatcaactt
tagtggttttgaccattcacaaaccttatcgaaagttcattcgatcactactcggaatgt
ctaatgccgtggatcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCATATATTACTCTGCCCGTGT 137 177 458 Antisense
GCCCGTGTTCTTATTGCAGTTTCAT 415 285 475 Antisense
GTACCTGAAGACCAATCTTCCGCGC 211 459 523 Antisense
AATTTTGAAGTCAATCCCCTGTCCT 471 175 555 Antisense
CTCCGGGATGTTCGTTCTAGTGATT 593 227 600 Antisense
GCTGCTTGCATTACCTGTACTTTGC 504 297 710 Antisense
GTATCATGCTTCAAGTATCCATTCC 97 455 791 Antisense
TACTCTTCTTATTGCCCAGTTTTGT 118 647 818 Antisense
TTCGGTTGTTTATGCCTCGATCCAT 462 683 897 Antisense
GAAAGTTCATTCGATCACTACTCGG 8 361 968 Antisense
GAATGTCTAATGCCGTGGATCTTCA 553 331 992 Antisense
Sequence Source Affymetrix Proprietary Database