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[191210_at] 7TM chemoreceptor, str family

Description F58G4.6 /REP_DB=WormBase Gene ID /WP=CE25028 /GEN=str-146 /TR=Q9GS10 /GB=AAG24136.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 11      6grp_cgc > 42      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 43.7
(-1.4)
M 		20.9
(-3)
A 		21.6
(-2.9)
A 		104.5
(3)
P 		84
B 30.8
(0)
P 		23
(-0.9)
A 		5.7
(-3)
A 		55.5
(3)
P 		50
C 5.5
(-3)
A 		31.1
(-1.6)
P 		7
(-2.9)
A 		114.7
(3)
P 		109
avr 26.7
(-1.9) 		25
(-2) 		11.4
(-3) 		91.6
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 34.4
(1.6)
A 		21.3
(-0.5)
M 		26.6
(0.3)
P 		5.6
(-3)
A 		43.3
(3)
P 		29.7
(0.8)
A 		38
B 40.9
(0.9)
A 		56.4
(2.6)
P 		59.7
(3)
M 		48.4
(1.7)
P 		29.6
(-0.3)
M 		5.6
(-3)
A 		54
C 61.8
(3)
P 		56.7
(2.2)
P 		21.5
(-3)
A 		30
(-1.7)
A 		36.1
(-0.8)
P 		25.1
(-2.5)
A 		40
avr 45.7
(3) 		44.8
(2.8) 		35.9
(0.7) 		28
(-1.1) 		36.3
(0.8) 		20.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.9
(3)
M 		4.5
(-3)
A 		5.6
(-2.4)
A 		15.3
(2.7)
P 		11
B 9.8
(1.9)
P 		5.7
(-0.5)
A 		1.3
(-3)
A 		11.8
(3)
P 		11
C 1.8
(-3)
A 		8.9
(-0.6)
P 		2.4
(-2.8)
A 		19.3
(3)
P 		18
avr 9.2
(-0) 		6.4
(-1.4) 		3.1
(-3) 		15.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.3
(-0.5)
A 		7.6
(0.2)
M 		5.8
(-0.7)
P 		1.4
(-3)
A 		13.1
(3)
P 		7.2
(-0)
A 		12
B 14.2
(1.3)
A 		18.8
(3)
P 		14.5
(1.5)
M 		12.8
(0.8)
P 		12
(0.6)
M 		2.1
(-3)
A 		17
C 22.9
(3)
P 		17.3
(1.1)
P 		5.5
(-3)
A 		6
(-2.8)
A 		11.7
(-0.9)
P 		8.4
(-2)
A 		17
avr 14.5
(2.9) 		14.6
(3) 		8.6
(-1.1) 		6.7
(-2.4) 		12.3
(1.4) 		5.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12260
Sequence Type Exemplar sequence
Representative Public ID F58G4.6 NCBI
Target Description F58G4.6 /REP_DB=WormBase Gene ID /WP=CE25028 /GEN=str-146 /TR=Q9GS10 /GB=AAG24136.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072688(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072688 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-146) (str-146) mRNA, complete cds. 10/11 None
GENEFINDER00000010863 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8096004:8100852:-1 9/11 None
F58G4.6 ENSEMBL cdna:known chromosome:CEL140:V:8096014:8098059:-1 gene:F58G4.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010854 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8096014-8098060(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-146
Ensembl F58G4.6
Entrez Gene 192016 Entrez gene
SwissProt Q9GS10 EMBL-EBI
WormBase CE35326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24136 Seven tm receptor protein 146 [Caenorhabditis elegans] ref|NP_505089.2| Seven TM Receptor family member (str-146) [Caenorhabditis elegans] 0.0
blast T30006 hypothetical protein F58G4.7 - Caenorhabditis elegans 1.0E-164
blast AAG24138 Seven tm receptor protein 145 [Caenorhabditis elegans] ref|NP_505090.2| Seven TM Receptor family member (str-145) [Caenorhabditis elegans] 1.0E-158
blast AAG24136 Seven tm receptor protein 146 [Caenorhabditis elegans] ref|NP_505089.2| Seven TM Receptor family member (str-146) [Caenorhabditis elegans] 1.0E-141
blast T30005 hypothetical protein F58G4.6 - Caenorhabditis elegans 1.0E-137
blast AAG24138 Seven tm receptor protein 145 [Caenorhabditis elegans] ref|NP_505090.2| Seven TM Receptor family member (str-145) [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505089.2 7 5-27,40-62,82-104,125-147,197-219,242-264,279-301
F58G4.6 7 5-27,40-62,82-104,125-147,197-219,242-264,279-301
GENEFINDER00000010863 10 13-31,63-85,106-128,171-193,220-242,305-327,348-370,420-442,465-487,502-524
Sequence
Target Sequence 
>C. ELEGANS:191210_AT
ttatcgcttggtatgcttttgtgtattttggaatgcataacagtattgagaagcaattgt
atttaaaggatgagctcaaaaccgtctacaatgaagattccacaaaagtagcgtttatcg
ctgttatgtattggacagttggtgaaaatggagaaaaactatggagattttgggatctta
tgcttcttgtagcctgtattttaactataggaggatgttttgctataattgtattttgtg
ctgcaaaaatcttcttaaaaatgaaaagtgcagggaataatatgagcaaaagatcactag
agcttaatcgacaacttcttgtcgctctaacatttcagtatcttttcgttgattttcaag
tatcttttcagacagtacttcccttattcatgatgtatattcctgtcagtttagaaatca
caatgccattgcttgaaattgaaactggtcatttagctaatttcactgctggaagtctag
cagtttatccttcgttggagccacttattgcaattttctgtataagagaattcaagaaag
ctgtattttgctgcattcaaccaaaaaagacttccaccgttcagttttctgcgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCGCTTGGTATGCTTTTGTGTA 660 679 425 Antisense
GGATGAGCTCAAAACCGTCTACAAT 152 513 492 Antisense
GATTTTGGGATCTTATGCTTCTTGT 509 429 590 Antisense
GCTTCTTGTAGCCTGTATTTTAACT 139 305 606 Antisense
GTCGCTCTAACATTTCAGTATCTTT 470 475 745 Antisense
TCAGACAGTACTTCCCTTATTCATG 486 621 792 Antisense
CTGGTCATTTAGCTAATTTCACTGC 408 241 869 Antisense
GTCTAGCAGTTTATCCTTCGTTGGA 101 467 899 Antisense
TCCTTCGTTGGAGCCACTTATTGCA 342 591 912 Antisense
AGCTGTATTTTGCTGCATTCAACCA 123 81 963 Antisense
TTCCACCGTTCAGTTTTCTGCGTAT 485 699 996 Antisense
Sequence Source Affymetrix Proprietary Database