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[191209_at] 7TM chemoreceptor, srh family

Description F47D2.9 /REP_DB=WormBase Gene ID /WP=CE26680 /GEN=srh-193 /TR=Q22989 /GB=AAG24117.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 04      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 6.4
(-1.1)
A 		8.6
(2)
A 		5.1
(-3)
A 		9.3
(3)
A 		4
B 21.8
(3)
A 		6
(-2.2)
A 		4.5
(-2.6)
A 		3.4
(-3)
A 		18
C 1.9
(-3)
A 		5.2
(-2.6)
A 		15.4
(-1.2)
A 		46.7
(3)
A 		45
avr 10
(-1.5) 		6.6
(-3) 		8.3
(-2.2) 		19.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 7.3
(-2.7)
A 		17.1
(-0.4)
A 		15.2
(-0.8)
A 		6
(-3)
A 		31.5
(3)
A 		6.6
(-2.9)
A 		26
B 3.7
(-3)
A 		26.8
(3)
A 		11.4
(-1)
A 		10.2
(-1.3)
A 		10.1
(-1.3)
A 		16
(0.2)
A 		23
C 16
(-0.9)
A 		40.6
(3)
A 		17.4
(-0.7)
A 		3.7
(-2.9)
A 		2.8
(-3)
A 		4.2
(-2.8)
A 		38
avr 9
(-2.3) 		28.2
(3) 		14.7
(-0.8) 		6.6
(-3) 		14.8
(-0.7) 		8.9
(-2.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(3)
A 		1.9
(0.6)
A 		1.3
(-3)
A 		1.4
(-2.4)
A 		1
B 7
(3)
A 		1.5
(-2.2)
A 		1.1
(-2.6)
A 		0.7
(-3)
A 		6
C 0.6
(-3)
A 		1.5
(-2.3)
A 		5.4
(0.9)
A 		7.9
(3)
A 		7
avr 3.3
(3) 		1.6
(-3) 		2.6
(0.5) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-3)
A 		6.1
(0.5)
A 		3.3
(-1.5)
A 		1.5
(-2.9)
A 		9.5
(3)
A 		1.6
(-2.8)
A 		8
B 1.3
(-3)
A 		8.9
(3)
A 		2.8
(-1.8)
A 		2.7
(-1.9)
A 		4.1
(-0.8)
A 		5.9
(0.6)
A 		8
C 5.9
(-0.3)
A 		12.4
(3)
A 		4.4
(-1.1)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		1.4
(-2.6)
A 		12
avr 2.8
(-2) 		9.1
(3) 		3.5
(-1.5) 		1.6
(-3) 		4.8
(-0.4) 		3
(-1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14832
Sequence Type Exemplar sequence
Representative Public ID F47D2.9 NCBI
Target Description F47D2.9 /REP_DB=WormBase Gene ID /WP=CE26680 /GEN=srh-193 /TR=Q22989 /GB=AAG24117.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071782(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071782 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-193) (srh-193) mRNA, complete cds. 9/11 A 
F47D2.9 ENSEMBL cdna:known chromosome:CEL140:V:4288226:4290007:-1 gene:F47D2.9 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032773 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4288225-4290007(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-193
Ensembl F47D2.9
Entrez Gene 185930 Entrez gene
SwissProt Q22989 EMBL-EBI
WormBase CE35973 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24117 Serpentine receptor, class h protein 193 [Caenorhabditis elegans] ref|NP_504183.2| Serpentine Receptor, class H family member (srh-193) [Caenorhabditis elegans] 0.0
blast AAW88397 Serpentine receptor, class h protein 194, isoform b [Caenorhabditis elegans] ref|NP_001023946.1| Serpentine Receptor, class H family member (srh-194) [Caenorhabditis elegans] 1.0E-172
blast T25786 hypothetical protein F47D2.9 - Caenorhabditis elegans 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504183.2 7 20-42,55-77,97-119,140-162,198-220,241-263,278-300
F47D2.9 7 20-42,55-77,97-119,140-162,198-220,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:191209_AT
agtggtcttgtttatgatccccatggtgtttttagttcctgaacaaactattgctgtcca
gcacacttttgaggtatgggcaatttttcacaaccagcaacttccatgtttacctaacta
catctataatgctccagtgttcgttttgagtgaagatattacttatcactttatcatatc
agtcatatttgttgttctttgttgtattgaaattagcgtatttgttggatatcttgcctc
aaacagcttggagcaattgaagcaaaaacggatgtccccgaaaacatttcaacttcagaa
aaagttttttatagtcctagtcattcaaatgtcaattccattgatatgttttctatttcc
acttatttctgcagcactgtcagttttactcaattattacaaccagggaatgattaatac
tggacttataatagcttcatggcatggaattgtttcaacaatatcgatgctcatacttca
tagaccatatcggagagcagtgaaagctcttttttataaatctgaaatgagcaaccaggt
ggaagtttcacaaagtcggtttacgaacttgcgatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGTCTTGTTTATGATCCCCATG 361 59 459 Antisense
GATCCCCATGGTGTTTTTAGTTCCT 707 379 474 Antisense
GTTCCTGAACAAACTATTGCTGTCC 641 441 493 Antisense
TGCTGTCCAGCACACTTTTGAGGTA 581 581 510 Antisense
GTATGGGCAATTTTTCACAACCAGC 686 455 532 Antisense
TTCCATGTTTACCTAACTACATCTA 328 699 560 Antisense
TAACTACATCTATAATGCTCCAGTG 171 639 573 Antisense
AATGCTCCAGTGTTCGTTTTGAGTG 544 165 586 Antisense
ATCGATGCTCATACTTCATAGACCA 25 37 921 Antisense
GAGCAACCAGGTGGAAGTTTCACAA 382 391 987 Antisense
GTCGGTTTACGAACTTGCGATCTTC 62 433 1013 Antisense
Sequence Source Affymetrix Proprietary Database