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[191207_at]

Description R09B5.7 /REP_DB=WormBase Gene ID /WP=CE12630 /GEN=srj-23 /TR=O44610 /GB=AAB94220.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 07      4grp_total > 12      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 30.5
(-1.3)
A 		27.6
(-1.8)
A 		20.4
(-3)
A 		56
(3)
A 		36
B 26.5
(3)
A 		1.4
(-3)
A 		2.1
(-2.8)
A 		6.3
(-1.8)
A 		25
C 4.7
(-3)
A 		23.6
(0.4)
A 		22.5
(0.2)
A 		38.1
(3)
A 		33
avr 20.6
(-1.2) 		17.5
(-2.2) 		15
(-3) 		33.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 26.7
(2.1)
A 		23.5
(1.4)
A 		16.3
(-0.2)
A 		30.9
(3)
A 		13.7
(-0.8)
A 		3.4
(-3)
A 		28
B 43
(3)
A 		13.2
(-1.3)
A 		24.5
(0.3)
A 		4.6
(-2.6)
A 		1.5
(-3)
A 		5.7
(-2.4)
A 		42
C 43.8
(3)
M 		19.3
(-0.5)
A 		5.2
(-2.5)
A 		13.9
(-1.3)
A 		1.6
(-3)
A 		29.3
(0.9)
A 		42
avr 37.8
(3) 		18.7
(-0.6) 		15.3
(-1.2) 		16.5
(-1) 		5.6
(-3) 		12.8
(-1.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.1
(3)
A 		6
(-2.3)
A 		5.3
(-3)
A 		8.2
(-0)
A 		6
B 8.4
(3)
A 		0.3
(-3)
A 		0.5
(-2.9)
A 		1.3
(-2.3)
A 		8
C 1.6
(-3)
A 		6.8
(2)
A 		7.8
(3)
A 		6.4
(1.6)
A 		6
avr 7
(3) 		4.4
(-3) 		4.5
(-2.8) 		5.3
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.9
(0.2)
A 		8.4
(3)
A 		3.5
(-0.9)
A 		7.8
(2.5)
A 		4.1
(-0.4)
A 		0.8
(-3)
A 		8
B 14.9
(3)
A 		4.4
(-1.4)
A 		5.9
(-0.8)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		2.1
(-2.4)
A 		14
C 16.2
(3)
M 		5.9
(-0.9)
A 		1.3
(-2.7)
A 		2.8
(-2.1)
A 		0.5
(-3)
A 		9.8
(0.6)
A 		16
avr 12
(3) 		6.2
(-0.4) 		3.6
(-1.9) 		3.9
(-1.7) 		1.7
(-3) 		4.2
(-1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15163
Sequence Type Exemplar sequence
Representative Public ID R09B5.7 NCBI
Target Description R09B5.7 /REP_DB=WormBase Gene ID /WP=CE12630 /GEN=srj-23 /TR=O44610 /GB=AAB94220.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028902 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-23) (srj-23) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028901 5/11 Cross Hyb Matching Probes None
SNAP00000025909 4/11 Cross Hyb Matching Probes None
SNAP00000025910 5/11 Cross Hyb Matching Probes None
GENEFINDER00000025924 4/11 Cross Hyb Matching Probes None
R09B5.7 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
191941 2 1 NM_001028902 191207_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1451462-1454169(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024073 Serpentine Receptor, class J family member (srj-23) [Caenorhabditis elegans] gb|AAX22285.1| Serpentine receptor, class j protein 23, isoform b [Caenorhabditis elegans] 0.0
blast AAB71279 Serpentine receptor, class j protein 25 [Caenorhabditis elegans] ref|NP_503308.1| Serpentine Receptor, class J family member (srj-25) [Caenorhabditis elegans] 1.0E-124
blast AAB71281 Serpentine receptor, class j protein 24 [Caenorhabditis elegans] ref|NP_503309.1| Serpentine Receptor, class J family member (srj-24) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024073.1 7 10-30,43-65,90-112,133-155,201-223,244-266,281-303
Sequence
Target Sequence 
>C. ELEGANS:191207_AT
cagttctttattgcattcttcatatgatttactgggtgattacatgctacgtatatattg
gtgcggatatggagcggaagctgtacatgcatgatacaataatggatgtctacggtgtgg
agtcaaccaagcttaacatgatagtggcactttatcgggaaggaagccaaaatgtgatca
aaaaatctataattggactggttgccaataccatatcttcagttttttgcgtttttgttt
atgttacgctcggtatattgatcatcaagaaattaggcagcaatagtttaataatgagta
agaaaaccaaaaaactgcaaacccaattgatgaaggcacttattgttcaatcggttatcc
cgacatttgtcagttttgctccttgcctggcgtcttggtatcaaccagtattcggtttcg
aattaggaagagcagtttatcacacttcttccgtcctagtatccgcatttccattcttcg
atcccaccgccatcattttctttgttccaacgttccgcaagcgatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTCTTTATTGCATTCTTCATAT 434 207 416 Antisense
TTTACTGGGTGATTACATGCTACGT 140 667 443 Antisense
GGAGCGGAAGCTGTACATGCATGAT 47 521 486 Antisense
TGGATGTCTACGGTGTGGAGTCAAC 237 551 518 Antisense
GTTGCCAATACCATATCTTCAGTTT 295 441 616 Antisense
TTACGCTCGGTATATTGATCATCAA 661 677 659 Antisense
GAAGGCACTTATTGTTCAATCGGTT 166 333 747 Antisense
TCGGTTATCCCGACATTTGTCAGTT 36 603 766 Antisense
TGCCTGGCGTCTTGGTATCAACCAG 452 585 799 Antisense
AAGAGCAGTTTATCACACTTCTTCC 677 153 843 Antisense
GTTCCAACGTTCCGCAAGCGATGCA 423 439 919 Antisense
Sequence Source Affymetrix Proprietary Database