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[191206_s_at] G-protein coupled receptor

Description T02E9.3 /REP_DB=WormBase Gene ID /WP=CE13066 /TR=O45732 /GB=CAB07650.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 564
1 2 3 4 range
A 717.2
(3)
P 		239.8
(-2.8)
P 		227.3
(-3)
P 		557.6
(1)
P 		490
B 755.7
(3)
P 		336.8
(-1.7)
P 		223.7
(-3)
P 		522.6
(0.4)
P 		532
C 672.6
(3)
P 		271.9
(-2)
P 		192
(-3)
P 		416.6
(-0.2)
P 		481
avr 715.2
(3) 		282.8
(-2.2) 		214.3
(-3) 		498.9
(0.4) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 679.4
(3)
P 		475.5
(0.5)
P 		244
(-2.3)
P 		295.9
(-1.6)
P 		183.1
(-3)
P 		184
(-3)
P 		496
B 668.7
(3)
P 		431.7
(0.1)
P 		293.2
(-1.6)
P 		355.2
(-0.8)
P 		238.5
(-2.3)
P 		180
(-3)
P 		489
C 510.4
(3)
P 		490.9
(2.7)
P 		351.6
(0.2)
P 		346.4
(0.1)
P 		204.1
(-2.5)
P 		175.4
(-3)
P 		335
avr 619.5
(3) 		466
(0.9) 		296.3
(-1.4) 		332.5
(-0.9) 		208.6
(-2.6) 		179.8
(-3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 261.1
(3)
P 		52
(-3)
P 		59.4
(-2.8)
P 		81.6
(-2.2)
P 		209
B 241
(3)
P 		83.2
(-2)
P 		51.8
(-3)
P 		111.4
(-1.1)
P 		189
C 222.6
(3)
P 		78.2
(-2.6)
P 		66.9
(-3)
P 		70.2
(-2.9)
P 		156
avr 241.6
(3) 		71.1
(-2.6) 		59.4
(-3) 		87.7
(-2.1) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 125.2
(0.9)
P 		169.1
(3)
P 		53.1
(-2.6)
P 		75.1
(-1.5)
P 		55.2
(-2.5)
P 		44.8
(-3)
P 		124
B 232.7
(3)
P 		143.7
(-0.2)
P 		71.2
(-2.9)
P 		94.1
(-2)
P 		96.9
(-1.9)
P 		67.1
(-3)
P 		166
C 189.2
(3)
P 		149.8
(1.2)
P 		89.5
(-1.6)
P 		69.7
(-2.5)
P 		66
(-2.7)
P 		58.7
(-3)
P 		131
avr 182.4
(3) 		154.2
(1.7) 		71.3
(-2.3) 		79.6
(-1.9) 		72.7
(-2.2) 		56.9
(-3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191206_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12551
Sequence Type Exemplar sequence
Representative Public ID T02E9.3 NCBI
Target Description T02E9.3 /REP_DB=WormBase Gene ID /WP=CE13066 /TR=O45732 /GB=CAB07650.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073483 NCBI Caenorhabditis elegans T02E9.3 (T02E9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000026345 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11365201:11368525:-1 11/11 None
T02E9.3 ENSEMBL cdna:known chromosome:CEL140:V:11365057:11368809:-1 gene:T02E9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026342 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11365200-11368742(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl T02E9.3
Entrez Gene 179571 Entrez gene
SwissProt O45732 EMBL-EBI
WormBase CE13066 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07650 Hypothetical protein T02E9.3 [Caenorhabditis elegans] ref|NP_505884.1| T02E9.3 [Caenorhabditis elegans] 0.0
blast CAE75229 Hypothetical protein CBG23180 [Caenorhabditis briggsae] 0.0
blast AAX52462 CG33517-PA, isoform A [Drosophila melanogaster] gb|AAN15957.1| dopamine 2-like receptor DD2R-461 [Drosophila melanogaster] ref|NP_001014760.1| CG33517-PA, isoform A [Drosophila melanogaster] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.3E-81
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.3E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505884.1 7 26-48,60-82,97-119,139-161,176-198,679-701,716-738
T02E9.3 7 26-48,60-82,97-119,139-161,176-198,679-701,716-738
GENEFINDER00000026345 7 12-34,46-68,83-105,125-147,162-184,665-687,702-724
Sequence
Target Sequence 
>C. ELEGANS:191206_S_AT
gcagtcactcttcttatacatcagcaagtggatcaagtgatacgtatcgaagaatttcta
tgaacagttatggtagcagtttgactgatggcactgagtcaacgtttgagtgtgactcaa
gaagatcttcggcatggtcgaccattcgtgcggctgtatttgatagacaacaaatgagag
gaggaaaagcaagcgttgatataactgtagatcgaactggatccccacaaaagaaaatgt
caacaatcagtagaggaaagctgagaagaattgcaactcaggtgacaagagcaattagaa
ggaaaagaagagaatccatggcaattcggcgggagtcaagggcgacgagagttgtagctg
ctattcttattgcgttcctgatctgctggattccgtacttctgcatttcaattttccgtg
gcgtcttgatgggattccaaattaacatcaacacaccaattcatctgacgctgtttgtct
acacttcttggcttggatatgcccactcgtgtttcaatccgctcatctacatgtgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTCACTCTTCTTATACATCAGC 40 313 1688 Antisense
AGAAGATCTTCGGCATGGTCGACCA 339 75 1807 Antisense
CGACCATTCGTGCGGCTGTATTTGA 499 251 1826 Antisense
GGGCGACGAGAGTTGTAGCTGCTAT 87 493 2027 Antisense
GTTCCTGATCTGCTGGATTCCGTAC 422 441 2061 Antisense
CTGCATTTCAATTTTCCGTGGCGTC 580 235 2088 Antisense
AACACACCAATTCATCTGACGCTGT 590 135 2137 Antisense
ATCTGACGCTGTTTGTCTACACTTC 148 35 2150 Antisense
GTCTACACTTCTTGGCTTGGATATG 64 469 2164 Antisense
TTGGATATGCCCACTCGTGTTTCAA 391 709 2180 Antisense
TCAATCCGCTCATCTACATGTGTCT 479 633 2201 Antisense
Sequence Source Affymetrix Proprietary Database