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[191205_s_at] nuclear hormone receptor

Description C33G8.11 /REP_DB=WormBase Gene ID /WP=CE27364 /TR=Q18396 /GB=AAC25855.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 44      4grp_total > 02      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 238.6
(-2.2)
P 		179.3
(-3)
P 		181
(-3)
P 		610.8
(3)
P 		432
B 227.8
(-2.6)
P 		250.6
(-2.4)
P 		197.1
(-3)
P 		710.1
(3)
P 		513
C 274.3
(-3)
P 		333
(-2)
P 		307.2
(-2.5)
P 		642.2
(3)
P 		368
avr 246.9
(-2.7) 		254.3
(-2.6) 		228.4
(-3) 		654.4
(3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 123.8
(-3)
P 		194.3
(-0.9)
P 		328.4
(3)
P 		134.6
(-2.7)
P 		159.3
(-2)
P 		146
(-2.3)
P 		205
B 329.7
(1.3)
P 		254.3
(-0.6)
P 		394.3
(3)
P 		222.1
(-1.5)
P 		163.7
(-3)
P 		185.9
(-2.4)
P 		231
C 210.3
(0.7)
P 		227.9
(1.8)
P 		152.4
(-3)
P 		214.4
(0.9)
P 		163.3
(-2.3)
P 		246.9
(3)
P 		95
avr 221.3
(-0.3) 		225.5
(-0.1) 		291.7
(3) 		190.4
(-1.7) 		162.1
(-3) 		192.9
(-1.6) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 86.9
(2.7)
P 		38.9
(-3)
P 		47.3
(-2)
P 		89.4
(3)
P 		51
B 72.6
(-1.5)
P 		61.9
(-2.1)
P 		45.7
(-3)
P 		151.3
(3)
P 		106
C 90.8
(-3)
P 		95.7
(-1.3)
P 		107.1
(2.6)
P 		108.3
(3)
P 		18
avr 83.4
(-0.9) 		65.5
(-3) 		66.7
(-2.9) 		116.3
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 22.8
(-3)
P 		69.1
(2.7)
P 		71.5
(3)
P 		34.1
(-1.6)
P 		48.1
(0.1)
P 		35.6
(-1.4)
P 		49
B 114.7
(3)
P 		84.6
(-0.2)
P 		95.7
(1)
P 		58.8
(-3)
P 		66.5
(-2.2)
P 		69.3
(-1.9)
P 		56
C 78
(2.4)
P 		69.5
(1.2)
P 		38.8
(-3)
P 		43.1
(-2.4)
P 		52.8
(-1.1)
P 		82.7
(3)
P 		44
avr 71.8
(2.5) 		74.4
(3) 		68.7
(1.8) 		45.3
(-3) 		55.8
(-0.8) 		62.5
(0.5) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191205_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12504
Sequence Type Exemplar sequence
Representative Public ID C33G8.11 NCBI
Target Description C33G8.11 /REP_DB=WormBase Gene ID /WP=CE27364 /TR=Q18396 /GB=AAC25855.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072369(11), AY204192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072369 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-107) (nhr-107) mRNA, complete cds. 11/11 None
AY204192 NCBI Caenorhabditis elegans clone yk709g4 nuclear receptor NHR-107 mRNA, complete cds. 11/11 None
SNAP00000000531 ENSEMBL cdna:SNAP chromosome:CEL140:V:6997853:6999662:-1 11/11 None
GENEFINDER00000000550 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6997853:6999662:-1 11/11 None
C33G8.11 ENSEMBL cdna:known chromosome:CEL140:V:6997808:6999707:-1 gene:C33G8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6997853-6999663(-) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear hormone receptor
Gene Symbol nhr-107
Ensembl C33G8.11
Entrez Gene 179083 Entrez gene
SwissProt Q86PJ2 EMBL-EBI
WormBase CE34731 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25855 Nuclear hormone receptor family protein 107 [Caenorhabditis elegans] ref|NP_504770.2| Nuclear Hormone Receptor family member (nhr-107) [Caenorhabditis elegans] gb|AAO39196.1| nuclear receptor NHR-107 [Caenorhabditis elegans] 0.0
blast AAO39195 nuclear receptor NHR-107 [Caenorhabditis elegans] 0.0
blast T34132 hypothetical protein C33G8.11 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.2E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.8E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.2E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.6E-6
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.1E-5
Sequence
Target Sequence 
>C. ELEGANS:191205_S_AT
tttcttgcattgaaactcaacgacatggaaaacatggcactgtttggaattattttttgg
gatggaagttatacgaatatcagcgacgaattatcagaactatgccattctatgcgaaaa
atcatatgtcgagagctgagcgcacattttaatgagacatgtacaacatcgagcagattc
tttgaaaccttggacactctgaacataattgaggtaagtctagccatgactaccagatct
caatgcaagcttttattgcagaaggcagaacgaaaatgtcaagaagaaattgctttgtgc
ggattttacaactttgaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTGCATTGAAACTCAACGACA 104 673 814 Antisense
GTTATACGAATATCAGCGACGAATT 315 447 881 Antisense
GCGACGAATTATCAGAACTATGCCA 655 289 896 Antisense
GAACTATGCCATTCTATGCGAAAAA 500 349 910 Antisense
ATCATATGTCGAGAGCTGAGCGCAC 38 31 934 Antisense
GAGAGCTGAGCGCACATTTTAATGA 435 395 944 Antisense
GAGACATGTACAACATCGAGCAGAT 323 393 967 Antisense
TCGAGCAGATTCTTTGAAACCTTGG 350 603 982 Antisense
GAAACCTTGGACACTCTGAACATAA 355 359 997 Antisense
GAAATTGCTTTGTGCGGATTTTACA 227 363 1099 Antisense
GTGCGGATTTTACAACTTTGAAGTT 681 401 1110 Antisense
Sequence Source Affymetrix Proprietary Database