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[191204_s_at] 17k antigen (O. volvulus)

Description C06A8.3 /REP_DB=WormBase Gene ID /WP=CE02454 /TR=Q17698 /GB=AAA81053.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=17k antigen (O. volvulus)
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 16      6grp_total > 23      4grp_total > 59      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11340
1 2 3 4 range
A 8382.1
(0.8)
P 		10370.7
(1.9)
P 		12407.7
(3)
P 		1276.8
(-3)
P 		11131
B 8263.8
(0.9)
P 		12026.2
(3)
P 		11796
(2.9)
P 		1088.9
(-3)
P 		10937
C 8579
(1.2)
P 		11895
(3)
P 		11245.9
(2.6)
P 		1067.5
(-3)
P 		10828
avr 8408.3
(1.1) 		11430.6
(2.8) 		11816.5
(3) 		1144.4
(-3) 		10672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6988
1 2 3 4 5 6 range
A 10541.7
(3)
P 		7988.5
(0.3)
P 		9033.5
(1.4)
P 		6708.2
(-1.1)
P 		5374
(-2.5)
P 		4918.8
(-3)
P 		5623
B 8617.9
(3)
P 		7486.3
(1.7)
P 		8434
(2.8)
P 		6355.8
(0.3)
P 		5447.9
(-0.8)
P 		3553.6
(-3)
P 		5064
C 9204.8
(3)
P 		7624.5
(1.2)
P 		7929.5
(1.6)
P 		7255.6
(0.8)
P 		6264.6
(-0.3)
P 		3868.7
(-3)
P 		5336
avr 9454.8
(3) 		7699.8
(1) 		8465.7
(1.9) 		6773.2
(-0) 		5695.5
(-1.2) 		4113.7
(-3) 		5341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3740
1 2 3 4 range
A 3051.9
(2.6)
P 		2251.2
(1.1)
P 		3243.6
(3)
P 		186.9
(-3)
P 		3057
B 2635.3
(2.3)
P 		2970.2
(3)
P 		2733.4
(2.5)
P 		232
(-3)
P 		2738
C 2839.9
(1.3)
P 		3419.9
(2.2)
P 		3919.5
(3)
P 		180
(-3)
P 		3740
avr 2842.4
(2.1) 		2880.4
(2.2) 		3298.8
(3) 		199.6
(-3) 		3099

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2214
1 2 3 4 5 6 range
A 1943.3
(-0.3)
P 		2841.1
(3)
P 		1967.3
(-0.2)
P 		1701.4
(-1.2)
P 		1621.6
(-1.5)
P 		1197.6
(-3)
P 		1644
B 2998.6
(3)
P 		2491.9
(1.2)
P 		2048
(-0.4)
P 		1683.4
(-1.7)
P 		2213.4
(0.2)
P 		1325.1
(-3)
P 		1674
C 3411.8
(3)
P 		2326.5
(-0.1)
P 		2018.2
(-1)
P 		1459.1
(-2.5)
P 		2027.1
(-0.9)
P 		1295.1
(-3)
P 		2117
avr 2784.6
(3) 		2553.2
(2.1) 		2011.2
(-0.1) 		1614.6
(-1.6) 		1954
(-0.3) 		1272.6
(-3) 		1512
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191204_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4245
Sequence Type Exemplar sequence
Representative Public ID C06A8.3 NCBI
Target Description C06A8.3 /REP_DB=WormBase Gene ID /WP=CE02454 /TR=Q17698 /GB=AAA81053.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=17k antigen (O. volvulus)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063239 NCBI Caenorhabditis elegans C06A8.3 (C06A8.3) mRNA, complete cds. 11/11 None
SNAP00000042214 ENSEMBL cdna:SNAP chromosome:CEL140:II:7790553:7791167:1 11/11 None
GENEFINDER00000042219 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7790553:7791167:1 11/11 None
C06A8.3 ENSEMBL cdna:known chromosome:CEL140:II:7790508:7791490:1 gene:C06A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7790549-7791164(+) 100.0 100.0
Public Domain and Genome References
Gene Title 17k antigen (O. volvulus)
Ensembl C06A8.3
Entrez Gene 174259 Entrez gene
SwissProt Q17698 EMBL-EBI
WormBase CE02454 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81053 Hypothetical protein C06A8.3 [Caenorhabditis elegans] ref|NP_495640.1| C06A8.3 [Caenorhabditis elegans] 9.0E-65
blast CAE67454 Hypothetical protein CBG12955 [Caenorhabditis briggsae] 4.0E-62
blast CAA88891 Hypothetical protein ZK970.7 [Caenorhabditis elegans] ref|NP_496220.1| ZK970.7 [Caenorhabditis elegans] 5.0E-48
Sequence
Target Sequence 
>C. ELEGANS:191204_S_AT
cgctgtgtctgtctacggacaaccagccggaggtcaagatgttccaccattccttcgtaa
tgccactccagctcaacttcagagcttccaacagctcattcaagccaacggtcatttgac
tgagaccgctcttgacggaaaggtccaagcctgggttaaccaacaaggaggaaaggttgc
tgctgactgggctgacttccaaaaattcatcaagggacaacagggacaagctgaggctgc
tcatcaagccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGTGTCTGTCTACGGACAACCA 443 253 51 Antisense
CGGACAACCAGCCGGAGGTCAAGAT 135 241 66 Antisense
GAGGTCAAGATGTTCCACCATTCCT 216 403 80 Antisense
GCTCAACTTCAGAGCTTCCAACAGC 684 301 121 Antisense
GCTCATTCAAGCCAACGGTCATTTG 453 301 144 Antisense
GTCATTTGACTGAGACCGCTCTTGA 643 467 161 Antisense
GAGACCGCTCTTGACGGAAAGGTCC 558 365 172 Antisense
GTCCAAGCCTGGGTTAACCAACAAG 649 473 193 Antisense
AGGAAAGGTTGCTGCTGACTGGGCT 174 55 219 Antisense
TGCTGACTGGGCTGACTTCCAAAAA 377 581 231 Antisense
AAGCTGAGGCTGCTCATCAAGCCGC 132 151 278 Antisense
Sequence Source Affymetrix Proprietary Database