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[191202_at] 7TM chemoreceptor, sri family

Description D2062.9 /REP_DB=WormBase Gene ID /WP=CE25837 /GEN=sri-77 /TR=O16591 /GB=AAB66070.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 51      4grp_total > 13      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 11.1
(-0.9)
A 		3.5
(-3)
A 		4.4
(-2.8)
A 		25.6
(3)
A 		22
B 33.9
(3)
A 		2.5
(-2.8)
A 		1.6
(-3)
A 		13.1
(-0.9)
A 		32
C 4.5
(-2.8)
A 		3
(-3)
A 		2.7
(-3)
A 		45.9
(3)
A 		43
avr 16.5
(0.2) 		3
(-3) 		2.9
(-3) 		28.2
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.5
(-1.2)
A 		8
(3)
A 		3.2
(-2.8)
A 		3
(-3)
A 		4.6
(-1.1)
A 		4.5
(-1.2)
A 		5
B 3.7
(-2.6)
A 		3.6
(-2.6)
A 		16.2
(3)
A 		8.7
(-0.3)
A 		2.7
(-3)
A 		3.8
(-2.5)
A 		14
C 4.8
(-0.3)
A 		4
(-1.1)
A 		3.5
(-1.7)
A 		8
(3)
A 		2.2
(-3)
A 		2.8
(-2.4)
A 		6
avr 4.3
(-1.5) 		5.2
(-0.3) 		7.6
(3) 		6.6
(1.6) 		3.2
(-3) 		3.7
(-2.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4
(3)
A 		0.8
(-3)
A 		1.2
(-2.3)
A 		3.7
(2.4)
A 		3
B 10.8
(3)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		2.8
(-1.6)
A 		10
C 1.5
(-2.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		7.7
(3)
A 		7
avr 5.4
(3) 		0.8
(-3) 		0.8
(-3) 		4.7
(2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		2.8
(3)
A 		0.7
(-3)
A 		0.8
(-2.7)
A 		1.4
(-1)
A 		1.1
(-1.9)
A 		2
B 1.3
(-2.6)
A 		1.2
(-2.8)
A 		3.9
(3)
A 		2.3
(-0.4)
A 		1.1
(-3)
A 		1.4
(-2.4)
A 		3
C 1.8
(3)
A 		1.2
(-0.3)
A 		0.9
(-1.9)
A 		1.6
(1.9)
A 		0.7
(-3)
A 		0.9
(-1.9)
A 		1
avr 1.3
(-1.3) 		1.7
(2.1) 		1.8
(3) 		1.6
(1.3) 		1.1
(-3) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5382
Sequence Type Exemplar sequence
Representative Public ID D2062.9 NCBI
Target Description D2062.9 /REP_DB=WormBase Gene ID /WP=CE25837 /GEN=sri-77 /TR=O16591 /GB=AAB66070.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061903 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-77) (sri-77) mRNA, complete cds. 11/11 None
D2062.9 ENSEMBL cdna:known chromosome:CEL140:II:2603209:2605420:-1 gene:D2062.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009060 5/11 Cross Hyb Matching Probes None
GENEFINDER00000009066 5/11 Cross Hyb Matching Probes None
D2062.10 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2603207-2605419(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-77
Ensembl D2062.9
Entrez Gene 191931 Entrez gene
SwissProt O16591 EMBL-EBI
WormBase CE25837 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494304 Serpentine Receptor, class I family member (sri-77) [Caenorhabditis elegans] gb|AAB66070.2| Serpentine receptor, class i protein 77 [Caenorhabditis elegans] 0.0
blast AAB95004 Serpentine receptor, class i protein 74 [Caenorhabditis elegans] ref|NP_494299.1| Serpentine Receptor, class I family member (sri-74) [Caenorhabditis elegans] 1.0E-141
blast T31976 hypothetical protein D2062.10 - Caenorhabditis elegans 7.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494304.1 7 15-37,49-71,91-113,133-155,193-215,243-265,278-300
D2062.9 7 15-37,49-71,91-113,133-155,193-215,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:191202_AT
aaacgcgttatacgtactttgcctgatttttccatttttcgtctgcgcaggtgcgaatag
cattagtctcagtcgggaagatgcgctgatctatatcaagaaggtctatccgaaagggta
cttgcaattctcaaacttgccgaatttcgtagtttatatgaagtctcaaaacacaataat
atttcttgtgacacttttttttgctgcaagttttgggttcctatgtctatgttttactat
atatgatattattcgtatgatggctgacttgaaacttcgaatatccaaagtggcttacga
gaagcatagcgaagctcttcgaagtgtgatcatccagtttataaccgctgtgttgtgtat
ggcgggtccgatgatacaggttctgatcttagttttcgaaattccacaaatgaatttcat
atctgaattaatattcgcttggttcgcaactcattcatcaattaacatggtttctctatt
tatatttttcccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGCGTTATACGTACTTTGCCTG 49 125 414 Antisense
GTACTTTGCCTGATTTTTCCATTTT 593 459 427 Antisense
CATTTTTCGTCTGCGCAGGTGCGAA 401 215 446 Antisense
GAATAGCATTAGTCTCAGTCGGGAA 245 327 468 Antisense
TTTGGGTTCCTATGTCTATGTTTTA 314 665 625 Antisense
GTGTGATCATCCAGTTTATAACCGC 4 489 737 Antisense
GTGTTGTGTATGGCGGGTCCGATGA 505 481 763 Antisense
TACAGGTTCTGATCTTAGTTTTCGA 693 639 788 Antisense
AATATTCGCTTGGTTCGCAACTCAT 110 173 843 Antisense
TGGTTCGCAACTCATTCATCAATTA 517 551 853 Antisense
TTCTCTATTTATATTTTTCCCGCCA 387 691 885 Antisense
Sequence Source Affymetrix Proprietary Database