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[191201_at] 7TM chemoreceptor, srm family

Description T28H11.2 /REP_DB=WormBase Gene ID /WP=CE26015 /GEN=srm-1 /TR=Q23060 /GB=AAB04602.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 40      4grp_total > 22      6grp_cgc > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 113
(0.1)
A 		55
(-3)
A 		82
(-1.6)
A 		168.5
(3)
A 		114
B 135.5
(3)
A 		105.6
(-0.3)
A 		80.4
(-3)
A 		84.4
(-2.6)
A 		55
C 119.7
(2.2)
A 		105
(0.5)
A 		76.3
(-3)
A 		126
(3)
M 		50
avr 122.7
(2.5) 		88.5
(-1.9) 		79.6
(-3) 		126.3
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 106.5
(2.8)
A 		75.1
(0.1)
A 		109.1
(3)
A 		85.2
(0.9)
A 		86.1
(1)
A 		39.5
(-3)
A 		70
B 112.5
(1.7)
A 		134.6
(3)
P 		68.3
(-1)
A 		108.8
(1.4)
P 		35.1
(-3)
A 		96.5
(0.7)
P 		100
C 88.1
(-2.6)
A 		104
(-1.4)
A 		83.1
(-3)
A 		159.3
(3)
A 		85
(-2.9)
A 		85.6
(-2.8)
A 		76
avr 102.4
(1.1) 		104.6
(1.4) 		86.8
(-0.8) 		117.8
(3) 		68.7
(-3) 		73.9
(-2.4) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 41.1
(3)
A 		11.9
(-3)
A 		21.4
(-1)
A 		24.7
(-0.4)
A 		29
B 43.2
(3)
A 		26.1
(-1.1)
A 		18.6
(-2.9)
A 		18
(-3)
A 		25
C 39.6
(3)
A 		30.2
(-0.1)
A 		26.6
(-1.2)
A 		21.2
(-3)
M 		18
avr 41.3
(3) 		22.7
(-2.6) 		22.2
(-2.7) 		21.3
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19.6
(0.5)
A 		26.7
(3)
A 		23.8
(2)
A 		21.6
(1.2)
A 		26
(2.8)
A 		9.6
(-3)
A 		17
B 39.1
(1.9)
A 		44.8
(3)
P 		16.6
(-2.5)
A 		28.8
(-0.1)
P 		14.3
(-3)
A 		36
(1.3)
P 		31
C 32.7
(3)
A 		31.7
(2.5)
A 		21.1
(-3)
A 		32
(2.6)
A 		27.5
(0.3)
A 		28.7
(0.9)
A 		12
avr 30.5
(1.3) 		34.4
(3) 		20.5
(-3) 		27.5
(0) 		22.6
(-2.1) 		24.8
(-1.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11006
Sequence Type Exemplar sequence
Representative Public ID T28H11.2 NCBI
Target Description T28H11.2 /REP_DB=WormBase Gene ID /WP=CE26015 /GEN=srm-1 /TR=Q23060 /GB=AAB04602.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068301 NCBI Caenorhabditis elegans Serpentine Receptor, class M family member (srm-1) (srm-1) mRNA, complete cds. 11/11 None
GENEFINDER00000000754 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5012539:5014536:1 11/11 None
T28H11.2 ENSEMBL cdna:known chromosome:CEL140:IV:5012539:5014594:1 gene:T28H11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000750 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5012544-5014600(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srm family
Gene Symbol srm-1
Ensembl T28H11.2
Entrez Gene 191955 Entrez gene
SwissProt Q23060 EMBL-EBI
WormBase CE26015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04602 Serpentine receptor, class m protein 1 [Caenorhabditis elegans] ref|NP_500702.1| Serpentine Receptor, class M family member (srm-1) [Caenorhabditis elegans] 0.0
blast AAB04602 Serpentine receptor, class m protein 1 [Caenorhabditis elegans] ref|NP_500702.1| Serpentine Receptor, class M family member (srm-1) [Caenorhabditis elegans] 1.0E-170
blast CAE72807 Hypothetical protein CBG20084 [Caenorhabditis briggsae] 1.0E-134
blast CAE72807 Hypothetical protein CBG20084 [Caenorhabditis briggsae] 1.0E-129
blast CAE72806 Hypothetical protein CBG20083 [Caenorhabditis briggsae] 2.0E-64
blast CAE72806 Hypothetical protein CBG20083 [Caenorhabditis briggsae] 9.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500702.1 7 15-37,50-72,92-111,132-154,203-225,246-268,283-305
T28H11.2 7 15-37,50-72,92-111,132-154,203-225,246-268,283-305
GENEFINDER00000000754 7 15-37,50-72,92-111,132-154,206-228,249-271,286-308
Sequence
Target Sequence 
>C. ELEGANS:191201_AT
gtccttacaaccacaatcatatcatttattgtctctctaatatccacagttctaatcacc
tttggctatgtcccagatgctgctgacgatcaactatcagaatatatcgtatacaatctg
aatggaatcggaaaatctgcatatttaattgcatcactagaaagatatgattacacgttg
aatgactttgttgctgacccaatttcatgggcatgtacgatttatataatggctgttcta
gtgataactacagtaattgcgatggtttgttggacaattatcagatacgaaattcataag
ggaagtcggagtacaaattcgatgaagtctcaacaacaattgaatatggtacttatggtt
cagttcattctaccatttctcactatccacattccattctatgtgtcttttctaatgcca
ttatttcgtatcgagacttctcatctgtcagtttatctaccgtatcttttttcttggtgt
ccggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTTACAACCACAATCATATCAT 467 477 409 Antisense
GTCTCTCTAATATCCACAGTTCTAA 431 469 439 Antisense
TAATCACCTTTGGCTATGTCCCAGA 501 635 461 Antisense
TCCCAGATGCTGCTGACGATCAACT 514 595 479 Antisense
GACTTTGTTGCTGACCCAATTTCAT 160 373 592 Antisense
TTCAGTTCATTCTACCATTTCTCAC 136 689 767 Antisense
TCACTATCCACATTCCATTCTATGT 458 627 788 Antisense
ATTCTATGTGTCTTTTCTAATGCCA 210 11 804 Antisense
TTCGTATCGAGACTTCTCATCTGTC 92 695 833 Antisense
CTCATCTGTCAGTTTATCTACCGTA 371 229 848 Antisense
TATCTTTTTTCTTGGTGTCCGGCTT 152 657 871 Antisense
Sequence Source Affymetrix Proprietary Database