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[191200_at] serine carboxypeptidase

Description C08H9.1 /REP_DB=WormBase Gene ID /WP=CE02987 /TR=SW:P52714 /GB=CAA91143.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster 4grp_high_8_8 > 09      6grp_total > 58      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 131.4
(3)
P 		80.7
(-3)
A 		111.9
(0.7)
P 		98.6
(-0.9)
M 		51
B 147.8
(3)
P 		105.9
(-1.2)
P 		88.5
(-3)
A 		107.5
(-1.1)
P 		59
C 111.6
(-1.4)
P 		109.6
(-1.7)
A 		101.3
(-3)
P 		140.8
(3)
P 		40
avr 130.3
(3) 		98.7
(-3) 		100.6
(-2.6) 		115.6
(0.2) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 138.2
(3)
P 		67
(-3)
A 		98.4
(-0.4)
A 		67.2
(-3)
A 		95.5
(-0.6)
M 		137
(2.9)
P 		71
B 100.1
(-1.9)
P 		124.1
(1.4)
A 		117.1
(0.4)
A 		93.5
(-2.8)
A 		92.4
(-3)
A 		135.7
(3)
P 		43
C 123.7
(0.3)
P 		135.3
(1)
M 		72.2
(-3)
A 		105.5
(-0.9)
A 		89.4
(-1.9)
A 		166.3
(3)
P 		94
avr 120.7
(0.3) 		108.8
(-0.9) 		95.9
(-2.3) 		88.7
(-3) 		92.4
(-2.6) 		146.3
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 47.9
(3)
P 		17.5
(-2.4)
A 		29.2
(-0.3)
P 		14.4
(-3)
M 		34
B 47.1
(3)
P 		26.1
(-1.7)
P 		20.5
(-3)
A 		22.9
(-2.5)
P 		27
C 36.9
(3)
P 		31.5
(0.5)
A 		35.3
(2.3)
P 		23.7
(-3)
P 		13
avr 44
(3) 		25
(-1.8) 		28.3
(-1) 		20.3
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 25.5
(0.1)
P 		23.8
(-0.5)
A 		21.4
(-1.4)
A 		17
(-3)
A 		28.8
(1.3)
M 		33.4
(3)
P 		16
B 34.8
(-0.7)
P 		41.3
(0.8)
A 		28.4
(-2.2)
A 		24.8
(-3)
A 		37.6
(-0)
A 		50.6
(3)
P 		26
C 45.9
(1.4)
P 		41.3
(0.7)
M 		18.4
(-3)
A 		21.2
(-2.5)
A 		28.9
(-1.3)
A 		55.7
(3)
P 		37
avr 35.4
(0.4) 		35.5
(0.4) 		22.7
(-2.6) 		21
(-3) 		31.8
(-0.5) 		46.6
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3419
Sequence Type Exemplar sequence
Representative Public ID C08H9.1 NCBI
Target Description C08H9.1 /REP_DB=WormBase Gene ID /WP=CE02987 /TR=SW:P52714 /GB=CAA91143.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063733 NCBI Caenorhabditis elegans C08H9.1 (C08H9.1) mRNA, complete cds. 11/11 None
SNAP00000001376 ENSEMBL cdna:SNAP chromosome:CEL140:II:9875090:9877785:1 11/11 None
GENEFINDER00000001386 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9875090:9877785:1 11/11 None
C08H9.1 ENSEMBL cdna:known chromosome:CEL140:II:9875090:9877785:1 gene:C08H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9875086-9877782(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine carboxypeptidase
Ensembl C08H9.1
Entrez Gene 182429 Entrez gene
SwissProt P52714 EMBL-EBI
WormBase CE02987 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91143 Hypothetical protein C08H9.1 [Caenorhabditis elegans] ref|NP_496134.1| C08H9.1 [Caenorhabditis elegans] sp|P52714|YXD2_CAEEL Putative serine carboxypeptidase C08H9.1 0.0
blast CAE67789 Hypothetical protein CBG13365 [Caenorhabditis briggsae] 0.0
blast CAE67578 Hypothetical protein CBG13109 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191200_AT
attgctacacaaacttctcgattcccaacgccactgatcccatcaaagaaactttggcac
aaatacctcggagaagaatttcggccctgtttaataagcactctactgacggtcaagctt
cgtatagatgttgggctgatgatgctctacataaatatttgaatttgaaagaagttcaaa
atgcattagggattgatagagcatggaaagataggaagaagaaatgggaagtctgcaata
tgccaatatatgatcaatatgtgatgactcatcaggatatgacgcccttctttagtaaaa
tatttgataaatttacgggtcctgcgttccgagtgttaatttacagtggagatattgaca
cggcttgcaactatttggcagacgggtattttacgttgaaacacgggccatggtatcatt
ctgaacataaagtgattgctgggaattttatgagatacgagggagcaaatcatttgggat
ccaagctgtcaattgatgttgttacagttaaaggatccggtcactttgtgccacttgacc
gccctggaccagcgctccaaatggttcacaactttctgacaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTACACAAACTTCTCGATTCC 171 7 908 Antisense
TTTCGGCCCTGTTTAATAAGCACTC 651 667 986 Antisense
ATAAGCACTCTACTGACGGTCAAGC 462 25 1001 Antisense
GATGTTGGGCTGATGATGCTCTACA 143 409 1034 Antisense
GATATGACGCCCTTCTTTAGTAAAA 209 425 1183 Antisense
GTCCTGCGTTCCGAGTGTTAATTTA 610 475 1226 Antisense
GACACGGCTTGCAACTATTTGGCAG 599 367 1264 Antisense
GAAACACGGGCCATGGTATCATTCT 567 355 1305 Antisense
TAAAGGATCCGGTCACTTTGTGCCA 299 639 1416 Antisense
GGACCAGCGCTCCAAATGGTTCACA 434 523 1453 Antisense
ATGGTTCACAACTTTCTGACAGGCA 532 51 1468 Antisense
Sequence Source Affymetrix Proprietary Database