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[191199_at] 7TM chemoreceptor, srd family

Description C04E6.9 /REP_DB=WormBase Gene ID /WP=CE25755 /GEN=srd-16 /TR=O01466 /GB=AAK39148.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 43      4grp_total > 02      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 7.1
(-2.9)
A 		5.5
(-3)
A 		7
(-2.9)
A 		124.1
(3)
A 		119
B 6.3
(-1.2)
A 		4.4
(-3)
A 		10.7
(3)
A 		9.4
(1.8)
A 		6
C 7.3
(-2.7)
A 		3.4
(-3)
A 		3.9
(-3)
A 		85.1
(3)
A 		82
avr 6.9
(-2.8) 		4.4
(-3) 		7.2
(-2.8) 		72.9
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 17.8
(3)
A 		4.6
(-2.8)
A 		5.6
(-2.3)
A 		4.8
(-2.7)
A 		11
(0)
A 		4.1
(-3)
A 		14
B 4.8
(0.4)
A 		3.2
(-2.5)
A 		2.9
(-3)
A 		6
(2.5)
A 		6.3
(3)
A 		5.3
(1.2)
A 		3
C 5.3
(-2.6)
A 		12.1
(-1.4)
A 		37.5
(3)
A 		6.9
(-2.4)
A 		3.7
(-2.9)
A 		3.2
(-3)
A 		34
avr 9.3
(-0.2) 		6.6
(-1.7) 		15.3
(3) 		5.9
(-2.1) 		7
(-1.5) 		4.2
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.6
(-2.5)
A 		1.2
(-3)
A 		1.8
(-2.8)
A 		18.2
(3)
A 		17
B 2
(0.9)
A 		1.1
(-3)
A 		2.5
(3)
A 		2
(0.9)
A 		1
C 2.4
(-2.4)
A 		1
(-3)
A 		1.3
(-2.9)
A 		14.4
(3)
A 		13
avr 2.3
(-2.3) 		1.1
(-3) 		1.9
(-2.5) 		11.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.3
(3)
A 		1.6
(-1.4)
A 		1.2
(-2.5)
A 		1.2
(-2.5)
A 		3.3
(3)
A 		1
(-3)
A 		2
B 1.7
(0.3)
A 		1.1
(-1.7)
A 		0.7
(-3)
A 		1.6
(0)
A 		2.5
(3)
A 		2
(1.3)
A 		2
C 2
(-2.4)
A 		3.7
(-1.1)
A 		9.5
(3)
A 		1.4
(-2.8)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		8
avr 2.3
(-0.8) 		2.1
(-1.3) 		3.8
(3) 		1.4
(-3) 		2.3
(-0.8) 		1.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11747
Sequence Type Exemplar sequence
Representative Public ID C04E6.9 NCBI
Target Description C04E6.9 /REP_DB=WormBase Gene ID /WP=CE25755 /GEN=srd-16 /TR=O01466 /GB=AAK39148.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072135 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-16) (srd-16) mRNA, complete cds. 11/11 None
GENEFINDER00000001272 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5901099:5902634:-1 11/11 None
C04E6.9 ENSEMBL cdna:known chromosome:CEL140:V:5901132:5902634:-1 gene:C04E6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5901131-5902634(-) 99.61 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-16
Ensembl C04E6.9
Entrez Gene 191805 Entrez gene
SwissProt O01466 EMBL-EBI
WormBase CE25755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39148 Serpentine receptor, class d (delta) protein 16 [Caenorhabditis elegans] ref|NP_504536.1| Serpentine Receptor, class D (delta) family member (srd-16) [Caenorhabditis elegans] 0.0
blast T25508 hypothetical protein C04E6.9 - Caenorhabditis elegans 1.0E-174
blast CAE64550 Hypothetical protein CBG09296 [Caenorhabditis briggsae] 1.0E-149
blast CAE64550 Hypothetical protein CBG09296 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504536.1 7 13-35,47-69,100-122,134-156,196-218,239-261,276-295
C04E6.9 7 13-35,47-69,100-122,134-156,196-218,239-261,276-295
GENEFINDER00000001272 7 13-35,47-69,100-122,134-156,196-218,239-261,276-295
Sequence
Target Sequence 
>C. ELEGANS:191199_AT
tttccctcgtttttgcaagctgtaacatactggacaaattttgtggagcgcttcgaaatt
cttccaatactcatgagagttcaccccgactatgacttcagtgatagctctattttgata
actggaattactaatttatatacaccatctgttgtctatggaatgctgcataccacactc
cctgttacaccaatttatattgctattttcattactcgatggaaaataatcaaggtttta
aagaaaaaccaaagttctatgtcaaagggtaccagggcacaacacgaccaactgctaaaa
attttaacgattcaagcaattcttccatcaacttcattttttacctcgtggctgtttatg
gggttaagatttggtttgttccaaggtcaagtctacgaacatttggttttctcatgtgct
atttttatgcccgtaatatctcctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCTCGTTTTTGCAAGCTGTAA 202 669 436 Antisense
GTGGAGCGCTTCGAAATTCTTCCAA 689 489 478 Antisense
TCATGAGAGTTCACCCCGACTATGA 485 621 506 Antisense
TATGGAATGCTGCATACCACACTCC 503 655 592 Antisense
ACACTCCCTGTTACACCAATTTATA 545 109 610 Antisense
CAAAGGGTACCAGGGCACAACACGA 45 189 698 Antisense
TCAAGCAATTCTTCCATCAACTTCA 180 631 747 Antisense
TCAACTTCATTTTTTACCTCGTGGC 49 629 763 Antisense
GGTTTGTTCCAAGGTCAAGTCTACG 365 505 808 Antisense
ATTTGGTTTTCTCATGTGCTATTTT 221 19 836 Antisense
TTTTATGCCCGTAATATCTCCTATT 51 677 858 Antisense
Sequence Source Affymetrix Proprietary Database