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[191197_s_at] Aminotransferase class IV

Description Y44A6D.5 /REP_DB=WormBase Gene ID /WP=CE20259 /TR=Q9XXD8 /GB=CAA19519.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Aminotransferase class IV
Cluster 6grp_total > 99      4grp_total > 43      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 24.7
(-3)
A 		86.1
(3)
A 		24.5
(-3)
A 		49.1
(-0.6)
A 		62
B 22.7
(-3)
A 		62.5
(3)
A 		43.8
(0.2)
A 		27.1
(-2.3)
A 		40
C 45.7
(0.4)
A 		64.5
(3)
A 		20.6
(-3)
A 		33.8
(-1.2)
A 		44
avr 31
(-2.8) 		71
(3) 		29.6
(-3) 		36.7
(-2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 29.1
(-3)
A 		48.7
(-1.7)
A 		55.6
(-1.3)
A 		48.8
(-1.7)
A 		118.2
(2.7)
P 		122.9
(3)
P 		94
B 42.6
(-3)
A 		57.8
(-2)
A 		60
(-1.8)
A 		53.1
(-2.3)
A 		133.3
(3)
P 		81.6
(-0.4)
P 		91
C 2.5
(-3)
A 		38.4
(-1.3)
A 		65.8
(0.1)
A 		56.5
(-0.4)
A 		86.8
(1.1)
A 		126.9
(3)
P 		124
avr 24.7
(-3) 		48.3
(-1.4) 		60.5
(-0.6) 		52.8
(-1.1) 		112.8
(3) 		110.5
(2.8) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(-1.7)
A 		18.7
(3)
A 		6.4
(-3)
A 		7.2
(-2.6)
A 		12
B 7.2
(-2.1)
A 		15.4
(3)
A 		10.1
(-0.3)
A 		5.8
(-3)
A 		10
C 15.1
(1.4)
A 		18.6
(3)
A 		7.2
(-2.3)
A 		5.7
(-3)
A 		13
avr 10.4
(-0.8) 		17.6
(3) 		7.9
(-2.1) 		6.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 5.4
(-3)
A 		17.3
(-0.6)
A 		12.1
(-1.7)
A 		12.4
(-1.6)
A 		35.7
(3)
P 		29.9
(1.9)
P 		30
B 14.8
(-2.9)
A 		19.2
(-2.2)
A 		14.6
(-2.9)
A 		14.1
(-3)
A 		54.1
(3)
P 		30.4
(-0.6)
P 		40
C 0.9
(-3)
A 		11.7
(-1.4)
A 		16.8
(-0.7)
A 		11.4
(-1.5)
A 		28.1
(0.9)
A 		42.5
(3)
P 		42
avr 7
(-3) 		16.1
(-1.3) 		14.5
(-1.6) 		12.6
(-2) 		39.3
(3) 		34.3
(2.1) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191197_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12560
Sequence Type Exemplar sequence
Representative Public ID Y44A6D.5 NCBI
Target Description Y44A6D.5 /REP_DB=WormBase Gene ID /WP=CE20259 /TR=Q9XXD8 /GB=CAA19519.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Aminotransferase class IV
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075613 NCBI Caenorhabditis elegans Y44A6D.5 (Y44A6D.5) mRNA, complete cds. 11/11 None
SNAP00000040630 ENSEMBL cdna:SNAP chromosome:CEL140:V:20799275:20800993:-1 11/11 None
GENEFINDER00000040635 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20799275:20800993:-1 11/11 None
Y44A6D.5 ENSEMBL cdna:known chromosome:CEL140:V:20799275:20801051:-1 gene:Y44A6D.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20799274-20800993(-) 100.0 100.0
Public Domain and Genome References
Gene Title Aminotransferase class IV
Ensembl Y44A6D.5
Entrez Gene 180361 Entrez gene
SwissProt Q9XXD8 EMBL-EBI
WormBase CE20259 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19519 Hypothetical protein Y44A6D.5 [Caenorhabditis elegans] ref|NP_508014.1| Y44A6D.5 [Caenorhabditis elegans] 0.0
blast CAE61614 Hypothetical protein CBG05537 [Caenorhabditis briggsae] 0.0
blast CAA91805 Hypothetical protein K02A4.1 [Caenorhabditis elegans] ref|NP_510144.1| Branched Chain AminoTransferase family member (bcat-1) [Caenorhabditis elegans] sp|P54688|BCAT_CAEEL Branched-chain-amino-acid aminotransferase, cytosolic (BCAT) (ECA39 protein) 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR001544 EMBL-EBI Aminotransferase, class IV 2.4E-105
Sequence
Target Sequence 
>C. ELEGANS:191197_S_AT
gatggctgcgttgcacggatgtgatcaagctatgtggctttctggagataatcgcctgat
cactgaagccggcgcgatgaatgtgttcatgctttggacaaatgaagacaatgaattgga
gctcataactccacctacagattctggtcttcttcttcccgggataactagacagtctat
cgtagagttggcacaggaaatgaacctgatgaaagtctccgagaagaacttcacaatggc
gcaactgtcacgcgcagttcacgagaaacgagttcacgaattctttgtatcaggtactgc
tgccaacgttggaccagtctctgaaattgtgtactgcgataaagaactggacgttatgga
gaacttgcagattcccacattgagtagcaaaatgcagttgcacacgagactcaacaagac
gctttctgacattcactttgggcgtatcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTGCGTTGCACGGATGTGAT 310 407 711 Antisense
GATAATCGCCTGATCACTGAAGCCG 134 423 757 Antisense
GAAGCCGGCGCGATGAATGTGTTCA 279 345 775 Antisense
CTCATAACTCCACCTACAGATTCTG 252 229 832 Antisense
TCTTCTTCTTCCCGGGATAACTAGA 189 615 858 Antisense
CAATGGCGCAACTGTCACGCGCAGT 593 183 944 Antisense
TGTATCAGGTACTGCTGCCAACGTT 411 559 996 Antisense
TGCCAACGTTGGACCAGTCTCTGAA 27 587 1011 Antisense
GAGAACTTGCAGATTCCCACATTGA 94 393 1069 Antisense
ACAAGACGCTTTCTGACATTCACTT 304 113 1124 Antisense
GACATTCACTTTGGGCGTATCGAGA 643 369 1138 Antisense
Sequence Source Affymetrix Proprietary Database