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[191195_at] Transthyretin-like family

Description T14G10.3 /REP_DB=WormBase Gene ID /WP=CE06449 /TR=Q22500 /GB=CAA93097.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 43      6grp_total > 62      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 991
1 2 3 4 range
A 408
(-2.4)
P 		986.7
(3)
P 		990.3
(3)
P 		341.6
(-3)
P 		649
B 419.8
(-3)
P 		1200.8
(2.1)
P 		1332.2
(3)
P 		529.8
(-2.3)
P 		912
C 414.5
(-3)
P 		1130.6
(3)
P 		1101.9
(2.8)
P 		561.6
(-1.8)
P 		716
avr 414.1
(-3) 		1106
(2.7) 		1141.5
(3) 		477.7
(-2.5) 		727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1325
1 2 3 4 5 6 range
A 757.8
(-2.7)
P 		1094
(-1.1)
P 		2009.3
(3)
P 		1128.3
(-1)
P 		974.2
(-1.7)
P 		684.1
(-3)
P 		1325
B 812.9
(-3)
P 		1302.7
(0.6)
P 		1000.6
(-1.6)
P 		1621
(3)
P 		1053.3
(-1.2)
P 		831.2
(-2.9)
P 		808
C 883.3
(-3)
P 		1039.8
(-0.3)
P 		1036.7
(-0.4)
P 		1021.4
(-0.7)
P 		1236.1
(3)
P 		1112.2
(0.9)
P 		353
avr 818
(-3) 		1145.5
(0.7) 		1348.9
(3) 		1256.9
(2) 		1087.9
(0.1) 		875.8
(-2.3) 		531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 148.5
(-0.2)
P 		214.2
(1.7)
P 		258.9
(3)
P 		50
(-3)
P 		209
B 133.9
(-2.4)
P 		296.6
(2.6)
P 		308.7
(3)
P 		112.9
(-3)
P 		196
C 137.2
(-2.1)
P 		325.1
(1.8)
P 		384.1
(3)
P 		94.7
(-3)
P 		289
avr 139.9
(-1.6) 		278.6
(2) 		317.2
(3) 		85.9
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 139.7
(-3)
P 		389.1
(2)
P 		437.6
(3)
P 		286.2
(-0)
P 		294
(0.1)
P 		166.6
(-2.5)
P 		298
B 282.9
(-1.7)
P 		433.6
(3)
P 		243
(-3)
P 		429.3
(2.9)
P 		427.9
(2.8)
P 		309.9
(-0.9)
P 		191
C 327.4
(0.8)
P 		317.3
(0.5)
P 		263.9
(-1.2)
P 		205.4
(-3)
P 		400
(3)
P 		372.3
(2.1)
P 		195
avr 250
(-3) 		380
(3) 		314.8
(-0) 		307
(-0.4) 		374
(2.7) 		282.9
(-1.5) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10310
Sequence Type Exemplar sequence
Representative Public ID T14G10.3 NCBI
Target Description T14G10.3 /REP_DB=WormBase Gene ID /WP=CE06449 /TR=Q22500 /GB=CAA93097.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069455 NCBI Caenorhabditis elegans T14G10.3 (T14G10.3) mRNA, complete cds. 11/11 None
SNAP00000034622 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10158034:10158705:1 11/11 None
GENEFINDER00000034631 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10158034:10158705:1 11/11 None
T14G10.3 ENSEMBL cdna:known chromosome:CEL140:IV:10158034:10158705:1 gene:T14G10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10158039-10158711(+) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl T14G10.3
Entrez Gene 177892 Entrez gene
SwissProt Q22500 EMBL-EBI
WormBase CE35618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93097 Hypothetical protein T14G10.3 [Caenorhabditis elegans] ref|NP_501856.2| T14G10.3 [Caenorhabditis elegans] 2.0E-85
blast CAE59920 Hypothetical protein CBG03406 [Caenorhabditis briggsae] 5.0E-79
blast CAE59921 Hypothetical protein CBG03407 [Caenorhabditis briggsae] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 6.7E-47
Sequence
Target Sequence 
>C. ELEGANS:191195_AT
ataattatctgcgtttccattcttcccatatctcttgctggtagagaatgtgtctgggtt
ctaggaaaagtcgaatgtcaaaatgatccgaccaagaatctgaatgttgagaaatatttc
aacaaaacactatttcagattcgtgtctgggatcgtgatggtccaggaccacttcaaatg
atagacccagatgatttgatgggtgtcacattttccaatgatgacggacgtttccaattg
gacggatgtggagatgatttcgattggattccgggagttaagaatgttccagaaccatat
attgaaattcgtcattactgtaacagtgaaaaaggagacatcttccaacttccagaattc
agtacttttgttccaaatacctatgatatcggaaccatcgttcttgacaaggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATTATCTGCGTTTCCATTCTTC 162 27 28 Antisense
TTCTTCCCATATCTCTTGCTGGTAG 264 689 47 Antisense
ATTCGTGTCTGGGATCGTGATGGTC 262 7 166 Antisense
GGTCCAGGACCACTTCAAATGATAG 475 501 187 Antisense
GATGGGTGTCACATTTTCCAATGAT 612 407 225 Antisense
GATGACGGACGTTTCCAATTGGACG 699 411 247 Antisense
GATGATTTCGATTGGATTCCGGGAG 397 409 280 Antisense
GACATCTTCCAACTTCCAGAATTCA 42 371 364 Antisense
AGAATTCAGTACTTTTGTTCCAAAT 153 75 381 Antisense
ATACCTATGATATCGGAACCATCGT 83 23 404 Antisense
GGAACCATCGTTCTTGACAAGGAGA 496 529 418 Antisense
Sequence Source Affymetrix Proprietary Database