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[191194_at]

Description T09A5.1 /REP_DB=WormBase Gene ID /WP=CE03645 /TR=SW:P45961 /GB=CAA85340.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calcium binding protein
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 32      6grp_total > 23      4grp_total > 54      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_high1_sub > De      6grp_cgc_sub > 03      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1301
1 2 3 4 range
A 1789.5
(3)
P 		750.3
(-1.8)
P 		807.7
(-1.5)
P 		488.6
(-3)
P 		1301
B 1378.1
(3)
P 		1069.4
(0.4)
P 		932.4
(-0.7)
P 		663.4
(-3)
P 		715
C 1648
(3)
P 		1176.9
(0.4)
P 		976.2
(-0.7)
P 		560.5
(-3)
P 		1088
avr 1605.2
(3) 		998.9
(-0.5) 		905.4
(-1.1) 		570.8
(-3) 		1034

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1227
1 2 3 4 5 6 range
A 998.8
(1.1)
P 		1172.3
(2.7)
P 		1203.2
(3)
P 		943.6
(0.7)
P 		732.8
(-1.3)
P 		540.3
(-3)
P 		663
B 1767.5
(3)
P 		1510
(1.5)
P 		1597.7
(2)
P 		1094.6
(-0.9)
P 		899.9
(-2)
P 		734.2
(-3)
P 		1033
C 1217.3
(1.3)
P 		1430.8
(3)
P 		1295.6
(1.9)
P 		1184.6
(1)
P 		697.9
(-3)
P 		845.7
(-1.8)
P 		733
avr 1327.9
(2.6) 		1371
(3) 		1365.5
(3) 		1074.3
(0.3) 		776.9
(-2.4) 		706.7
(-3) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 580
1 2 3 4 range
A 651.5
(3)
P 		162.9
(-2.1)
P 		211.2
(-1.6)
P 		71.5
(-3)
P 		580
B 439.5
(3)
P 		264.1
(-0.5)
P 		216.1
(-1.5)
P 		141.4
(-3)
P 		298
C 545.5
(3)
P 		338.4
(0.2)
P 		340.2
(0.3)
P 		94.5
(-3)
P 		451
avr 545.5
(3) 		255.1
(-0.9) 		255.8
(-0.9) 		102.5
(-3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 184.1
(-1.9)
P 		416.9
(3)
P 		262
(-0.3)
P 		239.3
(-0.7)
P 		221.1
(-1.1)
P 		131.6
(-3)
P 		285
B 615
(3)
P 		502.6
(1)
P 		388
(-1)
P 		289.9
(-2.7)
P 		365.6
(-1.4)
P 		273.8
(-3)
P 		341
C 451.2
(3)
P 		436.6
(2.6)
P 		329.8
(-0.2)
P 		238.2
(-2.7)
P 		225.8
(-3)
P 		283.1
(-1.5)
P 		225
avr 416.8
(2.1) 		452
(3) 		326.6
(-0.4) 		255.8
(-2.3) 		270.8
(-1.9) 		229.5
(-3) 		223
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5366
Sequence Type Exemplar sequence
Representative Public ID T09A5.1 NCBI
Target Description T09A5.1 /REP_DB=WormBase Gene ID /WP=CE03645 /TR=SW:P45961 /GB=CAA85340.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calcium binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027156(11), NM_001027157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027156 NCBI Caenorhabditis elegans CalEXcitin family member (cex-2) (cex-2) mRNA, complete cds. 11/11 None
NM_001027157 NCBI Caenorhabditis elegans CalEXcitin family member (cex-2) (cex-2) mRNA, complete cds. 11/11 None
GENEFINDER00000029451 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7832988:7835070:-1 11/11 None
T09A5.1a ENSEMBL cdna:known chromosome:CEL140:II:7832723:7835061:-1 gene:T09A5.1 11/11 None
T09A5.1b ENSEMBL cdna:known chromosome:CEL140:II:7833835:7835061:-1 gene:T09A5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029431 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7833803-7835058(-) 100.0 100.0
Public Domain and Genome References
Ensembl T09A5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85340 Hypothetical protein T09A5.1a [Caenorhabditis elegans] ref|NP_001022327.1| CalEXcitin family member (cex-2) [Caenorhabditis elegans] 1.0E-112
blast AAX81435 calexcitin 2 [Caenorhabditis elegans] 1.0E-109
blast AAX81435 calexcitin 2 [Caenorhabditis elegans] 1.0E-108
blast CAA85340 Hypothetical protein T09A5.1a [Caenorhabditis elegans] ref|NP_001022327.1| CalEXcitin family member (cex-2) [Caenorhabditis elegans] 1.0E-106
blast CAE67447 Hypothetical protein CBG12942 [Caenorhabditis briggsae] 1.0E-104
blast CAE48510 Hypothetical protein T09A5.1b [Caenorhabditis elegans] ref|NP_001022328.1| CalEXcitin family member (cex-2) [Caenorhabditis elegans] 2.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.12
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.35
Sequence
Target Sequence 
>C. ELEGANS:191194_AT
gcgttcactacatttttcgatctcgaccagaacggattgatcgagtggaaagatttcaaa
gatctgatagaggtaattggagaagttcgcggacgccgttcggatttcttcatgaccgcc
cgtctctgccttccagatatttggcaaaaaatgaccgaggcaattggaaaggaagaggaa
gatattatcaccctttccgactggattcaactgtgccaatcgtcgagaaaatcagttcgt
gagccggcttggcagaaagcgtacgttgagtacatgtttaagcttctcgatgaatcgggc
gatcatcttgtagatcaagctgaatatgttcaagtgctcgggtactttggagtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTCACTACATTTTTCGATCTCG 594 291 67 Antisense
TTCGATCTCGACCAGAACGGATTGA 699 683 82 Antisense
TTGGAGAAGTTCGCGGACGCCGTTC 572 621 143 Antisense
GCCGTTCGGATTTCTTCATGACCGC 630 283 161 Antisense
CGTCTCTGCCTTCCAGATATTTGGC 155 247 187 Antisense
CACCCTTTCCGACTGGATTCAACTG 605 199 255 Antisense
GATTCAACTGTGCCAATCGTCGAGA 425 431 270 Antisense
CAGTTCGTGAGCCGGCTTGGCAGAA 709 205 299 Antisense
GAGTACATGTTTAAGCTTCTCGATG 643 399 334 Antisense
TGAATCGGGCGATCATCTTGTAGAT 695 575 357 Antisense
AGTGCTCGGGTACTTTGGAGTCAAT 672 59 399 Antisense
Sequence Source Affymetrix Proprietary Database