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[191192_at] 7TM chemoreceptor, srh family

Description ZC204.5 /REP_DB=WormBase Gene ID /WP=CE15092 /GEN=srh-72 /TR=P91536 /GB=AAB37909.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 37      4grp_total > 27      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 63.7
(-1.3)
A 		77.2
(3)
A 		58.2
(-3)
A 		76
(2.6)
A 		19
B 59.2
(-0.3)
A 		96.3
(3)
A 		28.5
(-3)
A 		84.3
(1.9)
A 		68
C 64.2
(-2.2)
A 		56.3
(-3)
A 		58.9
(-2.7)
A 		113
(3)
A 		57
avr 62.4
(-1) 		76.6
(1) 		48.5
(-3) 		91.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 14.7
(-1.5)
A 		51.4
(3)
A 		43
(2)
A 		2.6
(-3)
A 		10.7
(-2)
A 		47
(2.5)
A 		49
B 54.4
(2.7)
A 		39.1
(0.7)
A 		10.3
(-3)
A 		56.4
(3)
A 		36.3
(0.4)
A 		36.2
(0.4)
A 		46
C 32.3
(3)
A 		13.2
(-2.1)
A 		13
(-2.1)
A 		10.2
(-2.9)
A 		18.1
(-0.8)
A 		9.8
(-3)
A 		23
avr 33.8
(2.6) 		34.6
(3) 		22.1
(-2.8) 		23.1
(-2.3) 		21.7
(-3) 		31
(1.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 23.2
(3)
A 		16.8
(-0.2)
A 		15.2
(-1)
A 		11.1
(-3)
A 		12
B 18.9
(1.3)
A 		23.8
(3)
A 		6.6
(-3)
A 		18
(1)
A 		17
C 21.2
(3)
A 		16.2
(-3)
A 		20.5
(2.2)
A 		19.1
(0.5)
A 		5
avr 21.1
(3) 		18.9
(1.1) 		14.1
(-3) 		16.1
(-1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.7
(-2.3)
A 		18.3
(3)
A 		9.4
(-0)
A 		0.7
(-3)
A 		3.2
(-2.1)
A 		11.4
(0.6)
A 		18
B 18.9
(3)
A 		13
(0.8)
A 		2.5
(-3)
A 		15
(1.6)
A 		14.7
(1.5)
A 		13.5
(1)
A 		16
C 12
(3)
A 		4
(-1.8)
A 		3.3
(-2.2)
A 		2
(-3)
A 		5.9
(-0.7)
A 		3.3
(-2.2)
A 		10
avr 11.2
(2.5) 		11.8
(3) 		5.1
(-3) 		5.9
(-2.3) 		7.9
(-0.5) 		9.4
(0.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4987
Sequence Type Exemplar sequence
Representative Public ID ZC204.5 NCBI
Target Description ZC204.5 /REP_DB=WormBase Gene ID /WP=CE15092 /GEN=srh-72 /TR=P91536 /GB=AAB37909.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061620 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-72) (srh-72) mRNA, complete cds. 11/11 None
SNAP00000031403 ENSEMBL cdna:SNAP chromosome:CEL140:II:1639216:1640549:-1 11/11 None
ZC204.5 ENSEMBL cdna:known chromosome:CEL140:II:1639216:1640599:-1 gene:ZC204.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1639214-1640598(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-72
Ensembl ZC204.5
Entrez Gene 191869 Entrez gene
SwissProt P91536 EMBL-EBI
WormBase CE15092 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37909 Serpentine receptor, class h protein 72 [Caenorhabditis elegans] ref|NP_494021.1| Serpentine Receptor, class H family member (srh-72) [Caenorhabditis elegans] sp|P91536|SRH72_CAEEL Serpentine receptor class H-72 (Protein srh-72) 0.0
blast AAB37909 Serpentine receptor, class h protein 72 [Caenorhabditis elegans] ref|NP_494021.1| Serpentine Receptor, class H family member (srh-72) [Caenorhabditis elegans] sp|P91536|SRH72_CAEEL Serpentine receptor class H-72 (Protein srh-72) 1.0E-104
blast CAD56599 Hypothetical protein T21B4.14 [Caenorhabditis elegans] ref|NP_496670.2| Serpentine Receptor, class H family member (srh-73) [Caenorhabditis elegans] 3.0E-90
blast T25056 hypothetical protein T21B4.10 - Caenorhabditis elegans 3.0E-90
blast CAD56599 Hypothetical protein T21B4.14 [Caenorhabditis elegans] ref|NP_496670.2| Serpentine Receptor, class H family member (srh-73) [Caenorhabditis elegans] 1.0E-44
blast T25056 hypothetical protein T21B4.10 - Caenorhabditis elegans 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494021.1 7 33-55,68-90,110-132,153-175,222-241,257-279,289-311
ZC204.5 7 33-55,68-90,110-132,153-175,222-241,257-279,289-311
SNAP00000031403 4 53-75,122-141,157-179,189-211
Sequence
Target Sequence 
>C. ELEGANS:191192_AT
tattggctcgctgggaactttttcggaacagtctttattacttcaccggtgtttttcaat
ttggcagatcagaatgcagagaaaatgaagattttggaggccatcccctgtccctccaag
gagttcttcctagaaccaatcaccgtctttgcaacctccggcgcctggaacacctacctc
ctaatctcaagatccctgaaaagcatctacatgctgcaaattatattcttcacttcatgc
tgtatatactaccttgtcattgtgaaaactgaccaagtgtctgctcaaactcggcggatc
caggccagatccttctacggcttgatcatccagaccctcatcccagcggctttcacattg
atcccatcagtcctgatttcgagtagatcggctcctgatcagcttgttaacaatttggta
tcaatatcttacgcggtacatattgttgtaggtagtttagctattctcctcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGGCTCGCTGGGAACTTTTTCG 610 665 472 Antisense
GAACAGTCTTTATTACTTCACCGGT 482 351 497 Antisense
GTCCCTCCAAGGAGTTCTTCCTAGA 199 475 581 Antisense
TAGAACCAATCACCGTCTTTGCAAC 116 653 602 Antisense
TACCTCCTAATCTCAAGATCCCTGA 154 651 646 Antisense
TGACCAAGTGTCTGCTCAAACTCGG 551 569 741 Antisense
TCAAACTCGGCGGATCCAGGCCAGA 557 629 756 Antisense
AGATCCTTCTACGGCTTGATCATCC 57 67 778 Antisense
TTCACATTGATCCCATCAGTCCTGA 273 687 823 Antisense
GAGTAGATCGGCTCCTGATCAGCTT 40 399 852 Antisense
AGGTAGTTTAGCTATTCTCCTCGTT 512 57 921 Antisense
Sequence Source Affymetrix Proprietary Database