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[191188_s_at] protein-tyrosine sulphotransferase

Description Y111B2A.15 /REP_DB=WormBase Gene ID /WP=CE26632 /GB=CAC35844.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine sulphotransferase
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 82      6grp_total > 39      4grp_total > 40      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 350.6
(-3)
P 		498.8
(2)
P 		530.1
(3)
P 		480.3
(1.3)
P 		180
B 351.3
(-3)
P 		454.9
(1.1)
P 		396.3
(-1.2)
P 		503.9
(3)
P 		153
C 371.7
(-2.6)
P 		360.4
(-3)
P 		533.5
(3)
P 		376
(-2.5)
P 		173
avr 357.9
(-3) 		438
(0.7) 		486.6
(3) 		453.4
(1.5) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 372.8
(0.6)
P 		453.5
(3)
P 		253.4
(-3)
P 		412.7
(1.8)
P 		432.2
(2.4)
P 		339.2
(-0.4)
P 		200
B 392.6
(0.3)
P 		462
(3)
P 		305.3
(-3)
P 		370.9
(-0.5)
P 		453.3
(2.7)
P 		395.5
(0.5)
P 		157
C 391.9
(-1.4)
P 		371.1
(-2.4)
P 		385.9
(-1.7)
P 		385.1
(-1.7)
P 		359.5
(-3)
P 		478.1
(3)
P 		119
avr 385.8
(0.7) 		428.9
(3) 		314.9
(-3) 		389.6
(0.9) 		415
(2.3) 		404.3
(1.7) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 127.7
(2)
P 		108.3
(0.3)
P 		138.6
(3)
P 		70.3
(-3)
P 		68
B 112
(2.9)
P 		112.4
(3)
P 		91.8
(-3)
P 		107.4
(1.5)
P 		21
C 123
(-0.1)
P 		103.6
(-1)
P 		185.9
(3)
P 		63.4
(-3)
P 		123
avr 120.9
(1.2) 		108.1
(-0.2) 		138.8
(3) 		80.4
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 68.7
(-2.2)
P 		161.3
(3)
P 		55.2
(-3)
P 		104.7
(-0.2)
P 		130.4
(1.3)
P 		82.6
(-1.5)
P 		106
B 136.6
(0.4)
P 		153.8
(1.3)
P 		74.1
(-3)
P 		98.2
(-1.7)
P 		184.2
(3)
P 		147.5
(1)
P 		110
C 145.3
(1.9)
P 		113.2
(-0.4)
P 		98.2
(-1.5)
P 		77.4
(-3)
P 		116.3
(-0.2)
P 		160
(3)
P 		83
avr 116.9
(0.6) 		142.8
(2.9) 		75.8
(-3) 		93.4
(-1.4) 		143.6
(3) 		130
(1.8) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191188_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6949
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.15 NCBI
Target Description Y111B2A.15 /REP_DB=WormBase Gene ID /WP=CE26632 /GB=CAC35844.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine sulphotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067245 NCBI Caenorhabditis elegans Y111B2A.15 (Y111B2A.15) mRNA, complete cds. 11/11 None
SNAP00000006164 ENSEMBL cdna:SNAP chromosome:CEL140:III:12652437:12655107:-1 11/11 None
GENEFINDER00000006262 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12652437:12656451:-1 11/11 None
Y111B2A.15 ENSEMBL cdna:known chromosome:CEL140:III:12652219:12662144:-1 gene:Y111B2A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12652432-12662075(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine sulphotransferase
Ensembl Y111B2A.15
Entrez Gene 176684 Entrez gene
SwissProt O77081 EMBL-EBI
WormBase CE26632 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585106_AT similar to tyrosylprotein sulfotransferase 1 cfa
CANINE_2:CFA.10745.1.A1_AT similar to tyrosylprotein sulfotransferase 1 cfa
CANINE_2:CFAAFFX.16819.1.S1_AT similar to tyrosylprotein sulfotransferase 1 cfa
DROSOPHILA_2:1632836_AT dm
DROSGENOME1:145018_AT dm
DROSGENOME1:145017_AT dm
CHICKEN:GGA.12045.1.S1_AT tyrosylprotein sulfotransferase 1 gga
HU35KSUBA:RC_AA451671_AT tyrosylprotein sulfotransferase 1 hs
HG-U133A:204140_AT tyrosylprotein sulfotransferase 1 hs
HG-U133_PLUS_2:204140_AT tyrosylprotein sulfotransferase 1 hs
HG-FOCUS:204140_AT tyrosylprotein sulfotransferase 1 hs
HG-U133A_2:204140_AT tyrosylprotein sulfotransferase 1 hs
U133_X3P:G4507664_3P_AT tyrosylprotein sulfotransferase 1 hs
HG-U95AV2:32718_AT tyrosylprotein sulfotransferase 1 hs
MOUSE430_2:1421733_A_AT protein-tyrosine sulfotransferase 1 mm
MOUSE430A_2:1421733_A_AT protein-tyrosine sulfotransferase 1 mm
MOE430A:1421733_A_AT protein-tyrosine sulfotransferase 1 mm
MU11KSUBB:W61385_S_AT protein-tyrosine sulfotransferase 1 mm
MG-U74AV2:103032_AT protein-tyrosine sulfotransferase 1 mm
MU19KSUBB:TC29297_AT Protein-tyrosine sulfotransferase 1, mRNA (cDNA clone MGC:13837 IMAGE:4035106) mm
MU19KSUBB:TC29297_G_AT Protein-tyrosine sulfotransferase 1, mRNA (cDNA clone MGC:13837 IMAGE:4035106) mm
MU19KSUBB:TC32256_AT Protein-tyrosine sulfotransferase 1, mRNA (cDNA clone MGC:13837 IMAGE:4035106) mm
RG-U34C:RC_AI229087_AT tyrosylprotein sulfotransferase 1 (predicted) rn
RAE230A:1383321_AT tyrosylprotein sulfotransferase 1 (predicted) rn
RAT230_2:1383321_AT tyrosylprotein sulfotransferase 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8146 sulfotransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35844 Hypothetical protein Y111B2A.15 [Caenorhabditis elegans] ref|NP_499646.3| Y111B2A.15 [Caenorhabditis elegans] sp|O77081|TPSA_CAEEL Protein-tyrosine sulfotransferase A (Tyrosylprotein sulfotransferase-A) (TPST-A) gb|AAC36062.1| tyrosylprotein sulfotransferase-A; TPST-A [Caenorhabditis elegans] 0.0
blast CAE60048 Hypothetical protein CBG03560 [Caenorhabditis briggsae] 0.0
blast CAC35844 Hypothetical protein Y111B2A.15 [Caenorhabditis elegans] ref|NP_499646.3| Y111B2A.15 [Caenorhabditis elegans] sp|O77081|TPSA_CAEEL Protein-tyrosine sulfotransferase A (Tyrosylprotein sulfotransferase-A) (TPST-A) gb|AAC36062.1| tyrosylprotein sulfotransferase-A; TPST-A [Caenorhabditis elegans] 1.0E-171
blast CAE60048 Hypothetical protein CBG03560 [Caenorhabditis briggsae] 1.0E-162
blast CAC35844 Hypothetical protein Y111B2A.15 [Caenorhabditis elegans] ref|NP_499646.3| Y111B2A.15 [Caenorhabditis elegans] sp|O77081|TPSA_CAEEL Protein-tyrosine sulfotransferase A (Tyrosylprotein sulfotransferase-A) (TPST-A) gb|AAC36062.1| tyrosylprotein sulfotransferase-A; TPST-A [Caenorhabditis elegans] 1.0E-134
blast CAE60048 Hypothetical protein CBG03560 [Caenorhabditis briggsae] 1.0E-125
blast AAF48286 CG32632-PB [Drosophila melanogaster] gb|AAM50933.1| LP09162p [Drosophila melanogaster] ref|NP_727717.1| CG32632-PB [Drosophila melanogaster] gb|AAM94031.1| tyrosylprotein sulfotransferase [Drosophila melanogaster] sp|Q9VYB7|TPST_DROME Probable protein-tyrosine sulfotransferase (Tyrosylprotein sulfotransferase) (TPST) 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR000863 EMBL-EBI Sulfotransferase 4.1E-8
Pfam IPR000863 EMBL-EBI Sulfotransferase 8.3E-5
Pfam IPR000863 EMBL-EBI Sulfotransferase 8.3E-5
Pfam IPR000863 EMBL-EBI Sulfotransferase 8.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499646.3 1 7-24
Y111B2A.15 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:191188_S_AT
actcttcccaaatgccaaatatcttctaatgatccgtgatggacgggccaccgtgaatag
tataatctcacgaaaagtcacaattaccggattcgatttgaacgatttccgtcaatgcat
gacgaaatggaatgcggcaattcaaataatggtagatcagtgtgaatcggttggagagaa
aaattgtttgaaagtgtattatgagcagctggtgctacatccggaagcacaaatgcggcg
aattacagagtttttggatattccgtgggatgataaagtgctgcaccatgagcagcttat
tggaaaagatatttctttatcgaatgtggaacggagctcggatcaagtcgttaaaccggt
taatcttgatgctcttatcaaatgggttggaacgattcctgaggatgttgttgctgatat
ggattcggttgcgccgatgttaaggagatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTTCCCAAATGCCAAATATCTT 242 101 528 Antisense
AATGATCCGTGATGGACGGGCCACC 122 163 555 Antisense
GGGCCACCGTGAATAGTATAATCTC 671 491 572 Antisense
AAAAGTCACAATTACCGGATTCGAT 12 133 600 Antisense
TGAACGATTTCCGTCAATGCATGAC 98 575 626 Antisense
ATGAGCAGCTGGTGCTACATCCGGA 392 43 728 Antisense
GTGGGATGATAAAGTGCTGCACCAT 302 489 792 Antisense
GGAGCTCGGATCAAGTCGTTAAACC 590 521 860 Antisense
AACCGGTTAATCTTGATGCTCTTAT 311 147 881 Antisense
TGCTGATATGGATTCGGTTGCGCCG 170 583 939 Antisense
GGTTGCGCCGATGTTAAGGAGATTA 198 499 954 Antisense
Sequence Source Affymetrix Proprietary Database