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[191186_at] Transthyretin-like family

Description Y44A6B.4 /REP_DB=WormBase Gene ID /WP=CE18387 /TR=O62448 /GB=CAA16372.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_total > 75      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7
(-2.7)
A 		10.4
(3)
A 		10.4
(3)
A 		6.8
(-3)
A 		4
B 7.6
(-0.3)
A 		9.2
(3)
A 		6.5
(-2.6)
A 		6.3
(-3)
A 		3
C 4.7
(-3)
A 		7
(-1.2)
A 		12.5
(3)
A 		8.1
(-0.4)
A 		8
avr 6.4
(-3) 		8.9
(1.4) 		9.8
(3) 		7.1
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 10.8
(-1.4)
A 		8.3
(-2.3)
A 		6.2
(-3)
A 		10.2
(-1.6)
A 		7.2
(-2.6)
A 		23.1
(3)
A 		17
B 7.5
(1.4)
A 		4
(-2.4)
A 		7.5
(1.4)
A 		3.4
(-3)
A 		7.9
(1.8)
A 		9
(3)
A 		6
C 10.5
(-2.4)
A 		10.1
(-2.5)
A 		6.5
(-3)
A 		49.8
(3)
A 		9.4
(-2.6)
A 		37.7
(1.3)
A 		43
avr 9.6
(-2) 		7.5
(-2.7) 		6.7
(-3) 		21.1
(2.2) 		8.2
(-2.5) 		23.3
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.5
(2.3)
A 		2.3
(1.6)
A 		2.7
(3)
A 		1
(-3)
A 		2
B 2.4
(3)
A 		2.3
(2.5)
A 		1.5
(-1.9)
A 		1.3
(-3)
A 		1
C 1.6
(-2.6)
A 		2
(-1.8)
A 		4.3
(3)
A 		1.4
(-3)
A 		3
avr 2.2
(0.8) 		2.2
(0.8) 		2.8
(3) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-2.1)
A 		2.9
(-0.9)
A 		1.4
(-3)
A 		2.6
(-1.3)
A 		2.2
(-1.9)
A 		5.6
(3)
A 		4
B 2.6
(1.1)
A 		1.3
(-2)
A 		1.8
(-0.8)
A 		0.9
(-3)
A 		3.2
(2.5)
A 		3.4
(3)
A 		3
C 3.9
(-1.7)
A 		3.1
(-2.2)
A 		1.6
(-3)
A 		10
(1.6)
A 		3.1
(-2.2)
A 		12.6
(3)
A 		11
avr 2.8
(-1.7) 		2.4
(-2.1) 		1.6
(-3) 		4.5
(0.1) 		2.8
(-1.7) 		7.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13077
Sequence Type Exemplar sequence
Representative Public ID Y44A6B.4 NCBI
Target Description Y44A6B.4 /REP_DB=WormBase Gene ID /WP=CE18387 /TR=O62448 /GB=CAA16372.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075585 NCBI Caenorhabditis elegans Y44A6B.4 (Y44A6B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000021703 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20633800:20634627:-1 11/11 None
Y44A6B.4 ENSEMBL cdna:known chromosome:CEL140:V:20633994:20634627:-1 gene:Y44A6B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20633993-20634627(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl Y44A6B.4
Entrez Gene 189897 Entrez gene
SwissProt O62448 EMBL-EBI
WormBase CE18387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16372 Hypothetical protein Y44A6B.4 [Caenorhabditis elegans] ref|NP_507986.1| Y44A6B.4 [Caenorhabditis elegans] 7.0E-83
blast CAA16372 Hypothetical protein Y44A6B.4 [Caenorhabditis elegans] ref|NP_507986.1| Y44A6B.4 [Caenorhabditis elegans] 4.0E-82
blast AAB52282 Hypothetical protein F19F10.4 [Caenorhabditis elegans] ref|NP_504946.2| F19F10.4 [Caenorhabditis elegans] 1.0E-14
blast AAB52282 Hypothetical protein F19F10.4 [Caenorhabditis elegans] ref|NP_504946.2| F19F10.4 [Caenorhabditis elegans] 3.0E-14
blast CAE57118 Hypothetical protein CBG25028 [Caenorhabditis briggsae] 2.0E-12
blast CAE57118 Hypothetical protein CBG25028 [Caenorhabditis briggsae] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 8.0E-13
Sequence
Target Sequence 
>C. ELEGANS:191186_AT
caatttccataacactgtgctcccgcggattcgtcaagataaagggtcaatttctttgca
atggattaccgtggaaaaatgaaaaagtggcaatttacgaagcgaattacgtgctgccag
atacaatgtttgcaatgaatttgactgactctgatggaaatttcaatttggaagcttcag
ggaaagatatctacccaatccgtccctacatctacctgcccaactattgcaatgcagccc
agtttctgaacagagagtgggcggcctacttgcgcattcgaattccagatttttatattg
aaagtctcaaaaatcaagattttgagccattggattttggccgaattgagctgagtcacg
tggaatccgagcaaattgggtttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTCCATAACACTGTGCTCCCG 253 181 44 Antisense
GCTCCCGCGGATTCGTCAAGATAAA 122 299 62 Antisense
GAAGCGAATTACGTGCTGCCAGATA 564 343 142 Antisense
GGAAAGATATCTACCCAATCCGTCC 559 525 224 Antisense
CATCTACCTGCCCAACTATTGCAAT 405 213 252 Antisense
GCAATGCAGCCCAGTTTCTGAACAG 603 321 272 Antisense
ACAGAGAGTGGGCGGCCTACTTGCG 546 105 293 Antisense
CTACTTGCGCATTCGAATTCCAGAT 155 227 309 Antisense
GATTTTGGCCGAATTGAGCTGAGTC 484 429 376 Antisense
GAGCTGAGTCACGTGGAATCCGAGC 95 385 391 Antisense
GAATCCGAGCAAATTGGGTTTCACA 457 329 406 Antisense
Sequence Source Affymetrix Proprietary Database