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[191183_at] G-protein coupled receptor

Description R106.2 /REP_DB=WormBase Gene ID /WP=CE07454 /TR=Q23033 /GB=AAB04992.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 28      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 223.1
(3)
P 		61
(-3)
A 		60.7
(-3)
A 		122
(-0.7)
A 		162
B 184.8
(3)
P 		49.6
(-2.7)
A 		42.8
(-3)
A 		62.3
(-2.2)
A 		142
C 420.5
(3)
P 		90.5
(-2.1)
A 		34.3
(-3)
A 		140.3
(-1.4)
P 		386
avr 276.1
(3) 		67
(-2.5) 		45.9
(-3) 		108.2
(-1.4) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 186
(2.4)
P 		81.5
(-3)
A 		122.7
(-0.9)
P 		85.4
(-2.8)
A 		196.9
(3)
P 		119.5
(-1)
P 		115
B 184.9
(3)
M 		147.6
(0.5)
P 		111
(-2)
P 		96.6
(-3)
A 		108.7
(-2.2)
P 		140.3
(-0)
P 		88
C 130.8
(-0.3)
P 		164.5
(3)
P 		141
(0.7)
A 		149.2
(1.5)
M 		102.4
(-3)
P 		149.4
(1.5)
P 		62
avr 167.2
(3) 		131.2
(-0.8) 		124.9
(-1.5) 		110.4
(-3) 		136
(-0.3) 		136.4
(-0.3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 81.2
(3)
P 		13.2
(-3)
A 		15.9
(-2.8)
A 		17.9
(-2.6)
A 		68
B 58.9
(3)
P 		12.2
(-2.7)
A 		9.9
(-3)
A 		13.3
(-2.6)
A 		49
C 139.2
(3)
P 		26
(-2.3)
A 		12
(-3)
A 		23.6
(-2.5)
P 		127
avr 93.1
(3) 		17.1
(-2.7) 		12.6
(-3) 		18.3
(-2.6) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 34.3
(-1)
P 		29
(-1.8)
A 		26.7
(-2.2)
P 		21.7
(-3)
A 		59.4
(3)
P 		29.1
(-1.8)
P 		38
B 64.3
(3)
M 		49.1
(0.6)
P 		26.9
(-2.8)
P 		25.6
(-3)
A 		44.2
(-0.1)
P 		52.3
(1.1)
P 		39
C 48.5
(2.5)
P 		50.2
(3)
P 		35.9
(-1.2)
A 		30
(-3)
M 		33.1
(-2.1)
P 		50
(2.9)
P 		20
avr 49
(3) 		42.8
(1.4) 		29.8
(-2) 		25.8
(-3) 		45.6
(2.1) 		43.8
(1.7) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17838
Sequence Type Exemplar sequence
Representative Public ID R106.2 NCBI
Target Description R106.2 /REP_DB=WormBase Gene ID /WP=CE07454 /TR=Q23033 /GB=AAB04992.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078432 NCBI Caenorhabditis elegans R106.2 (R106.2) mRNA, complete cds. 11/11 None
GENEFINDER00000044315 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17483250:17488304:-1 11/11 None
R106.2 ENSEMBL cdna:known chromosome:CEL140:X:17483250:17486753:-1 gene:R106.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044313 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17483248-17486752(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl R106.2
Entrez Gene 187897 Entrez gene
SwissProt Q23033 EMBL-EBI
WormBase CE35752 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589216_AT somatostatin receptor 2 cfa
CANINE:1582925_AT somatostatin receptor 2 cfa
CANINE_2:CFA.11233.1.A1_AT somatostatin receptor 2 cfa
CANINE_2:CFA.186.1.S1_S_AT somatostatin receptor 2 cfa
CANINE:1582924_AT somatostatin receptor 2 cfa
CANINE_2:CFA.186.1.A1_AT somatostatin receptor 2 cfa
DROSOPHILA_2:1634889_AT allatostatin C receptor 2 dm
DROSOPHILA_2:1624643_A_AT allatostatin C receptor 2 dm
DROSGENOME1:148996_AT allatostatin C receptor 2 dm
CHICKEN:GGA.925.1.S1_AT somatostatin receptor 2 gga
CHICKEN:GGA.925.1.A1_AT somatostatin receptor 2 gga
HG-U133_PLUS_2:214597_AT somatostatin receptor 2 hs
HG-U133A_2:214597_AT somatostatin receptor 2 hs
HG-FOCUS:214597_AT somatostatin receptor 2 hs
HG-U133A:214597_AT somatostatin receptor 2 hs
HG-U133_PLUS_2:217455_S_AT somatostatin receptor 2 hs
HG-U133A_2:217455_S_AT somatostatin receptor 2 hs
HG-U133A:217455_S_AT somatostatin receptor 2 hs
HU35KSUBA:HUM_ALU_AT somatostatin receptor 2 hs
HU35KSUBB:HUM_ALU_AT somatostatin receptor 2 hs
HU35KSUBC:HUM_ALU_AT somatostatin receptor 2 hs
HU35KSUBD:HUM_ALU_AT somatostatin receptor 2 hs
HUGENEFL:HUM_ALU_AT somatostatin receptor 2 hs
HC-G110:HUM_ALU_AT somatostatin receptor 2 hs
HU35KSUBC:RC_D80448_AT somatostatin receptor 2 hs
HUGENEFL:M81830_AT somatostatin receptor 2 hs
U133_X3P:HS.45177.0.A1_3P_AT somatostatin receptor 2 hs
U133_X3P:HS.184841.1.S1_3P_A_AT somatostatin receptor 2 hs
U133_X3P:HS.184841.0.S2_3P_X_AT somatostatin receptor 2 hs
U133_X3P:214597_3P_AT somatostatin receptor 2 hs
HG-U133_PLUS_2:239031_AT somatostatin receptor 2 hs
HG-U133B:239031_AT somatostatin receptor 2 hs
HG-U95AV2:40919_AT somatostatin receptor 2 hs
HG-U95B:54346_AT somatostatin receptor 2 hs
MG-U74AV2:98351_G_AT somatostatin receptor 2 mm
MG-U74AV2:98350_AT somatostatin receptor 2 mm
MOUSE430_2:1422256_AT somatostatin receptor 2 mm
MOE430A:1422256_AT somatostatin receptor 2 mm
MOUSE430A_2:1422256_AT somatostatin receptor 2 mm
MU11KSUBB:X68951_S_AT somatostatin receptor 2 mm
RAE230A:1371174_S_AT somatostatin receptor 2 rn
RAT230_2:1371174_S_AT somatostatin receptor 2 rn
RN-U34:M93273_AT somatostatin receptor 2 rn
RG-U34A:M93273_AT somatostatin receptor 2 rn
RAE230A:1368782_AT somatostatin receptor 2 rn
RAT230_2:1368782_AT somatostatin receptor 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04992 Hypothetical protein R106.2 [Caenorhabditis elegans] ref|NP_510833.2| R106.2 [Caenorhabditis elegans] 0.0
blast CAE58688 Hypothetical protein CBG01863 [Caenorhabditis briggsae] 2.0E-74
blast XP_396335 PREDICTED: similar to ENSANGP00000009053 [Apis mellifera] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-37
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.4E-12
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-37
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.4E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510833.2 7 37-59,71-93,108-130,151-173,223-245,271-293,313-335
R106.2 7 37-59,71-93,108-130,151-173,223-245,271-293,313-335
GENEFINDER00000044315 7 104-126,135-157,172-194,215-237,287-309,335-357,377-399
Sequence
Target Sequence 
>C. ELEGANS:191183_AT
gtcactgtactcgagtcagcaaccgaaatgaatgaaacattgcttaatgagatcgagcag
aacatgctggcttctagaaggtacttagtcaattcttttgagatgttaaacttgaaatat
ttcagattcttcatcagttatacatttgccctttcgtatctgataccattagttgccgtc
tggtatttttatttcaaaataatattgaaaatgtgtcaaagaaaacgacaaatgcaaact
aaaagaacggctaccaagaaacgaactaccaaggtaaccataatggggctagccattgtc
atctcctacacccactgctggcttccgttttggattgttcaatggtcgattgaagcaaat
ctattcgaaaaaagcaagtacctgcttttttgctgcacacactttgcatttgcccttcag
tacatcaactctgctgcgaacccgttcctctacgtttttctctcagattctttccagaaa
aatattcaaaagctattacgaactgccaaaccggataagcagatcatgctcaaaaactcc
actgatccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTGTACTCGAGTCAGCAACCG 367 465 817 Antisense
CGAGCAGAACATGCTGGCTTCTAGA 148 251 870 Antisense
TACATTTGCCCTTTCGTATCTGATA 303 645 957 Antisense
ATCTGATACCATTAGTTGCCGTCTG 105 31 974 Antisense
AATGGGGCTAGCCATTGTCATCTCC 385 163 1098 Antisense
GCTGGCTTCCGTTTTGGATTGTTCA 136 295 1133 Antisense
TGCTGCACACACTTTGCATTTGCCC 14 583 1207 Antisense
CATTTGCCCTTCAGTACATCAACTC 233 215 1223 Antisense
GTTTTTCTCTCAGATTCTTTCCAGA 330 449 1270 Antisense
GCTATTACGAACTGCCAAACCGGAT 22 1 1308 Antisense
TGCTCAAAAACTCCACTGATCCGCA 123 581 1343 Antisense
Sequence Source Affymetrix Proprietary Database