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[191182_at] ADP-ribosylation factor

Description Y57G11C.13 /REP_DB=WormBase Gene ID /WP=CE14950 /TR=O18237 /GB=CAB16514.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ribosylation factor
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 62      4grp_high_8_8 > 19      6grp_highest_nonorm > 75      6grp_total > 39      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 1023.9
(0.6)
P 		1106.3
(2.6)
P 		875.8
(-3)
P 		1123.5
(3)
P 		248
B 1105.9
(1.1)
P 		926.8
(-3)
P 		975.3
(-1.9)
P 		1187.9
(3)
P 		261
C 1179
(3)
P 		1066.1
(0.2)
P 		938.9
(-3)
P 		1018.4
(-1)
P 		240
avr 1102.9
(2.8) 		1033.1
(0.4) 		930
(-3) 		1109.9
(3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 1033
(2.4)
P 		904.9
(-0.1)
P 		761.7
(-3)
P 		1062
(3)
P 		936.2
(0.5)
P 		1050.5
(2.8)
P 		300
B 1070.4
(3)
P 		821.2
(-2.5)
P 		796.6
(-3)
P 		911.2
(-0.5)
P 		970.5
(0.8)
P 		946.8
(0.3)
P 		274
C 1251.4
(3)
P 		904.3
(-2.1)
P 		906.4
(-2)
P 		839.9
(-3)
P 		949.2
(-1.4)
P 		967.8
(-1.1)
P 		412
avr 1118.3
(3) 		876.8
(-1.9) 		821.6
(-3) 		937.7
(-0.7) 		952
(-0.4) 		988.4
(0.4) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 372.8
(3)
P 		240.2
(-0.8)
P 		229
(-1.1)
P 		164.5
(-3)
P 		208
B 352.7
(3)
P 		228.9
(-2.9)
P 		226
(-3)
P 		253.1
(-1.7)
P 		127
C 390.3
(3)
P 		306.5
(0.7)
P 		327.2
(1.3)
P 		171.7
(-3)
P 		219
avr 371.9
(3) 		258.5
(-0.9) 		260.7
(-0.8) 		196.4
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 190.4
(-2.1)
P 		321.8
(3)
P 		165.9
(-3)
P 		269.4
(1)
P 		282.5
(1.5)
P 		255.8
(0.5)
P 		156
B 372.4
(2.3)
P 		273.3
(-0.6)
P 		193.4
(-3)
P 		241.3
(-1.6)
P 		394.3
(3)
P 		353.1
(1.8)
P 		201
C 463.8
(3)
P 		275.9
(-0.8)
P 		230.7
(-1.7)
P 		168.9
(-3)
P 		307.1
(-0.2)
P 		324
(0.2)
P 		295
avr 342.2
(3) 		290.3
(0.9) 		196.7
(-3) 		226.5
(-1.8) 		328
(2.4) 		311
(1.7) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9566
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.13 NCBI
Target Description Y57G11C.13 /REP_DB=WormBase Gene ID /WP=CE14950 /TR=O18237 /GB=CAB16514.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ribosylation factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070390 NCBI Caenorhabditis elegans Y57G11C.13 (Y57G11C.13) mRNA, complete cds. 11/11 None
SNAP00000003481 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14798141:14798793:1 11/11 None
GENEFINDER00000003568 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14798141:14798793:1 11/11 None
Y57G11C.13 ENSEMBL cdna:known chromosome:CEL140:IV:14798111:14799191:1 gene:Y57G11C.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14798146-14798799(+) 100.0 100.0
Public Domain and Genome References
Gene Title ADP-ribosylation factor
Ensembl Y57G11C.13
Entrez Gene 178405 Entrez gene
SwissProt O18237 EMBL-EBI
WormBase CE14950 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252225_AT ADP-ribosylation factor, putative at
CANINE_2:CFAAFFX.9364.1.S1_AT similar to ADP-ribosylation factor-like 10C cfa
DROSOPHILA_2:1629715_AT dm
DROSGENOME1:154468_AT dm
CHICKEN:GGA.14450.1.S1_AT similar to ADP-ribosylation factor-like 10C gga
HG-U133A:217852_S_AT ADP-ribosylation factor-like 10C hs
HG-U133A_2:217852_S_AT ADP-ribosylation factor-like 10C hs
HG-U133_PLUS_2:217852_S_AT ADP-ribosylation factor-like 10C hs
HU35KSUBA:T30617_AT ADP-ribosylation factor-like 10C hs
HU35KSUBB:RC_R51818_AT ADP-ribosylation factor-like 10C hs
HU35KSUBC:RC_H99500_AT ADP-ribosylation factor-like 10C hs
HU35KSUBD:RC_AA227124_S_AT ADP-ribosylation factor-like 10C hs
HU35KSUBD:RC_AA215457_AT ADP-ribosylation factor-like 10C hs
U133_X3P:G8922600_3P_A_AT ADP-ribosylation factor-like 10C hs
U133_X3P:HS.104222.0.S1_3P_A_AT ADP-ribosylation factor-like 10C hs
HG-U133_PLUS_2:222442_S_AT ADP-ribosylation factor-like 10C hs
HG-U133B:222442_S_AT ADP-ribosylation factor-like 10C hs
HG-U95B:58842_AT ADP-ribosylation factor-like 10C hs
HG-U95C:63321_AT ADP-ribosylation factor-like 10C hs
HU35KSUBD:RC_AA258872_AT ADP-ribosylation factor-like 10C hs
MU11KSUBA:C78956_RC_G_AT ADP-ribosylation factor-like 10C mm
MU11KSUBA:C78956_RC_AT ADP-ribosylation factor-like 10C mm
MU11KSUBB:MSA.29137.0_S_AT ADP-ribosylation factor-like 10C mm
MG-U74AV2:98491_AT ADP-ribosylation factor-like 10C mm
MG-U74AV2:98490_AT ADP-ribosylation factor-like 10C mm
MG-U74AV2:95435_AT ADP-ribosylation factor-like 10C mm
MG-U74CV2:167220_I_AT ADP-ribosylation factor-like 10C mm
MOE430A:1428138_S_AT ADP-ribosylation factor-like 10C mm
MOUSE430A_2:1428138_S_AT ADP-ribosylation factor-like 10C mm
MOUSE430_2:1428138_S_AT ADP-ribosylation factor-like 10C mm
MOE430A:1428137_AT ADP-ribosylation factor-like 10C mm
MOUSE430A_2:1428137_AT ADP-ribosylation factor-like 10C mm
MOUSE430_2:1428137_AT ADP-ribosylation factor-like 10C mm
MOE430A:1418819_AT ADP-ribosylation factor-like 10C mm
MOUSE430A_2:1418819_AT ADP-ribosylation factor-like 10C mm
MOUSE430_2:1418819_AT ADP-ribosylation factor-like 10C mm
MU19KSUBC:TC39640_AT ADP-ribosylation factor-like 10C, mRNA (cDNA clone MGC:19261 IMAGE:3983809) mm
MU19KSUBC:TC39849_S_AT ADP-ribosylation factor-like 10C, mRNA (cDNA clone MGC:19261 IMAGE:3983809) mm
MU19KSUBC:TC42035_AT ADP-ribosylation factor-like 10C, mRNA (cDNA clone MGC:19261 IMAGE:3983809) mm
MU19KSUBC:TC42035_G_AT ADP-ribosylation factor-like 10C, mRNA (cDNA clone MGC:19261 IMAGE:3983809) mm
RG-U34C:RC_AI102574_AT similar to ADP-ribosylation factor-like 10C rn
RAE230A:1373133_AT similar to ADP-ribosylation factor-like 10C rn
RAT230_2:1373133_AT similar to ADP-ribosylation factor-like 10C rn
RAE230B:1397815_AT similar to ADP-ribosylation factor-like 10C rn
RAT230_2:1397815_AT similar to ADP-ribosylation factor-like 10C rn
RAE230B:1384157_AT similar to ADP-ribosylation factor-like 10C rn
RAT230_2:1384157_AT similar to ADP-ribosylation factor-like 10C rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16514 Hypothetical protein Y57G11C.13 [Caenorhabditis elegans] ref|NP_502791.1| Y57G11C.13 [Caenorhabditis elegans] dbj|BAD30093.1| novel small G protein indispensable for equal chromosome segregation [Caenorhabditis elegans] 1.0E-103
blast CAE73905 Hypothetical protein CBG21511 [Caenorhabditis briggsae] 1.0E-102
blast XP_414440 PREDICTED: similar to ADP-ribosylation factor-like 10C [Gallus gallus] 9.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 2.1E-38
Sequence
Target Sequence 
>C. ELEGANS:191182_AT
agttgacacttgttgggctccaaaactctggaaaaacgacatttgtcaatgttattgcta
gcggccaattcacagaagatatgatcccaacagtcggattcaatatgcggaagatcacca
aaggcaacgtgacgatcaaattatgggatatcgggggccagccacggttccgctcgatgt
gggaacgatattgccgcggtgtcaacgccatcgtcttcatggtggacgctgccgacgagg
agaagctcgaagcatccagaaatgagcttatgcagctgttggacaagccacagctcgacg
ctattccagttttggtgctcggaaacaagaaggatttgcctggagcacttgatgagcggc
aattgatcgaaagaatgaatctgtcatcaatccagaatcgcgagatttgctgctattcta
tttcatgcaaagagaaggagaatattgatatcaccctccaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGACACTTGTTGGGCTCCAAAA 661 63 77 Antisense
GTTATTGCTAGCGGCCAATTCACAG 654 447 127 Antisense
TTATGGGATATCGGGGGCCAGCCAC 301 671 217 Antisense
CCACGGTTCCGCTCGATGTGGGAAC 329 271 238 Antisense
TGGGAACGATATTGCCGCGGTGTCA 554 553 256 Antisense
CAACGCCATCGTCTTCATGGTGGAC 562 187 279 Antisense
CTGTTGGACAAGCCACAGCTCGACG 383 237 352 Antisense
GACGCTATTCCAGTTTTGGTGCTCG 521 379 373 Antisense
GAAGGATTTGCCTGGAGCACTTGAT 122 333 405 Antisense
GATTTGCTGCTATTCTATTTCATGC 20 429 480 Antisense
GAATATTGATATCACCCTCCAATGG 37 327 516 Antisense
Sequence Source Affymetrix Proprietary Database