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[191179_at] nuclear hormone receptor

Description F41B5.10 /REP_DB=WormBase Gene ID /WP=CE17819 /TR=O16677 /GB=AAG24107.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_total > 07      4grp_total > 23      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 223.9
(3)
A 		99
(-2.6)
A 		90.1
(-3)
A 		166.8
(0.4)
A 		134
B 218.4
(2.5)
A 		135.4
(-0.8)
A 		78
(-3)
A 		232.5
(3)
A 		155
C 217.8
(3)
A 		89.4
(-3)
A 		96.2
(-2.7)
A 		160.8
(0.3)
A 		128
avr 220
(3) 		107.9
(-2.1) 		88.1
(-3) 		186.7
(1.5) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 288.4
(3)
A 		173
(-0.8)
A 		165.8
(-1)
A 		121.4
(-2.5)
A 		147.5
(-1.6)
A 		105.7
(-3)
A 		183
B 288.1
(3)
A 		226.8
(0.9)
A 		222.3
(0.8)
A 		200.4
(0)
A 		111.2
(-3)
A 		125.5
(-2.5)
A 		177
C 248.3
(3)
A 		237.3
(2.6)
A 		162.6
(-0.4)
A 		156
(-0.6)
A 		95.6
(-3)
A 		228.5
(2.2)
A 		153
avr 274.9
(3) 		212.4
(0.6) 		183.6
(-0.5) 		159.3
(-1.4) 		118.1
(-3) 		153.2
(-1.7) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 81.5
(3)
A 		21.5
(-3)
A 		23.5
(-2.8)
A 		24.4
(-2.7)
A 		60
B 69.6
(3)
A 		33.4
(-1.2)
A 		18.1
(-3)
A 		49.5
(0.7)
A 		52
C 72.1
(3)
A 		25.7
(-3)
A 		33.5
(-2)
A 		27.1
(-2.8)
A 		46
avr 74.4
(3) 		26.9
(-2.8) 		25
(-3) 		33.7
(-1.9) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 53.2
(1.6)
A 		61.5
(3)
A 		36.1
(-1.3)
A 		30.8
(-2.1)
A 		44.5
(0.2)
A 		25.7
(-3)
A 		36
B 100.3
(3)
A 		75.5
(0.3)
A 		54
(-2)
A 		53.1
(-2.1)
A 		45.2
(-3)
A 		46.8
(-2.8)
A 		55
C 92
(3)
A 		72.4
(1.1)
A 		41.4
(-2)
A 		31.4
(-3)
A 		30.9
(-3)
A 		76.5
(1.5)
A 		61
avr 81.8
(3) 		69.8
(1.3) 		43.8
(-2.3) 		38.4
(-3) 		40.2
(-2.8) 		49.7
(-1.4) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15193
Sequence Type Exemplar sequence
Representative Public ID F41B5.10 NCBI
Target Description F41B5.10 /REP_DB=WormBase Gene ID /WP=CE17819 /TR=O16677 /GB=AAG24107.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071220 NCBI Caenorhabditis elegans F41B5.10 (F41B5.10) mRNA, complete cds. 11/11 None
SNAP00000036007 ENSEMBL cdna:SNAP chromosome:CEL140:V:2262384:2263483:-1 11/11 None
F41B5.10 ENSEMBL cdna:known chromosome:CEL140:V:2262384:2264369:-1 gene:F41B5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2262383-2264369(-) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear hormone receptor
Gene Symbol nhr-183
Ensembl F41B5.10
Entrez Gene 185594 Entrez gene
SwissProt O16677 EMBL-EBI
WormBase CE17819 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24107 Hypothetical protein F41B5.10 [Caenorhabditis elegans] ref|NP_503621.1| F41B5.10 [Caenorhabditis elegans] 0.0
blast AAG24105 Hypothetical protein F41B5.9 [Caenorhabditis elegans] ref|NP_503620.1| F41B5.9 [Caenorhabditis elegans] 1.0E-153
blast CAE58146 Hypothetical protein CBG01235 [Caenorhabditis briggsae] 1.0E-146
blast AAG24105 Hypothetical protein F41B5.9 [Caenorhabditis elegans] ref|NP_503620.1| F41B5.9 [Caenorhabditis elegans] 1.0E-126
blast CAE58146 Hypothetical protein CBG01235 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.7E-5
Sequence
Target Sequence 
>C. ELEGANS:191179_AT
acaacggactggctcacgaatttcaatgaattcaatgttctgccacttgatgttcagttg
aaaatagtgaaaaccatttggcaagtctatggaagattcgagaaaattgcaaaaactgca
gagctccgaagaaaaaagttgattgagcacgacaatgtgtttatggtaggagatgaagct
tgcttgaattcgaaaaatgtggagatggatgtttcgtggtatacggattacagttttgag
caaattgcgtacttcatggactgcttccacgacgacatctatctgcaaattgtcaaagaa
ttcgagaccctgaatccgacacccattgagctcaactttatgctgctgcaagtctgcctc
caccacgccgggaagaagctgcatggcgacatgttagaattgacagattatctacaggaa
gttatttctaatcaactacacaatcactacctgaatgttcgaaaaatgccaaattactcc
gccaggcttgccagaatgatgaaagtcaacaatttgatgaggacggatcttcggcgacaa
tctgaaaaagtgcagttggcaatggcttttgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACGGACTGGCTCACGAATTTCA 276 111 583 Antisense
ATGTTCTGCCACTTGATGTTCAGTT 557 47 617 Antisense
AATTGCGTACTTCATGGACTGCTTC 679 177 825 Antisense
TTCCACGACGACATCTATCTGCAAA 338 701 847 Antisense
GAATTCGAGACCCTGAATCCGACAC 677 321 880 Antisense
GACACCCATTGAGCTCAACTTTATG 604 367 900 Antisense
CTTTATGCTGCTGCAAGTCTGCCTC 687 221 918 Antisense
GGGAAGAAGCTGCATGGCGACATGT 549 491 952 Antisense
TCAACTACACAATCACTACCTGAAT 243 631 1014 Antisense
GACGGATCTTCGGCGACAATCTGAA 107 377 1104 Antisense
GTGCAGTTGGCAATGGCTTTTGATG 247 481 1132 Antisense
Sequence Source Affymetrix Proprietary Database