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[191176_at] 7TM chemoreceptor, srj family

Description T06A1.2 /REP_DB=WormBase Gene ID /WP=CE25980 /GEN=srj-16 /TR=O61926 /GB=AAK72089.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 61      4grp_total > 39      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 56.1
(3)
A 		21.9
(-3)
A 		23.8
(-2.7)
A 		43.5
(0.8)
A 		34
B 83.6
(3)
A 		22.2
(-3)
A 		29.3
(-2.3)
A 		35
(-1.7)
A 		61
C 55.5
(3)
A 		21.8
(-3)
A 		46.5
(1.4)
A 		29.2
(-1.7)
A 		34
avr 65.1
(3) 		22
(-3) 		33.2
(-1.4) 		35.9
(-1.1) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 27.8
(-1.9)
A 		47.6
(-0.2)
A 		15.2
(-3)
A 		85.5
(3)
A 		72.6
(1.9)
A 		19.3
(-2.7)
A 		70
B 42.2
(0.5)
A 		61.6
(3)
A 		31.9
(-0.9)
A 		29.7
(-1.1)
A 		44.3
(0.8)
A 		15.4
(-3)
A 		46
C 38.4
(-1.7)
A 		20.4
(-2.4)
A 		151.7
(3)
A 		80.2
(0)
A 		49
(-1.3)
A 		7
(-3)
A 		145
avr 36.1
(-0.5) 		43.2
(0.4) 		66.3
(3) 		65.1
(2.9) 		55.3
(1.7) 		13.9
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.4
(3)
A 		4.8
(-3)
A 		6.2
(-2.5)
A 		6.4
(-2.4)
A 		16
B 26.7
(3)
A 		5.5
(-3)
A 		6.8
(-2.6)
A 		7.5
(-2.4)
A 		21
C 18.4
(3)
A 		6.3
(-2.4)
A 		16.2
(2)
A 		4.9
(-3)
A 		14
avr 21.8
(3) 		5.5
(-3) 		9.7
(-1.5) 		6.3
(-2.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.1
(-2.4)
A 		16.9
(1.4)
A 		3.3
(-3)
A 		21.7
(2.9)
A 		21.9
(3)
A 		4.7
(-2.5)
A 		19
B 14.7
(0.6)
A 		20.5
(3)
A 		7.7
(-2.2)
A 		7.9
(-2.1)
A 		18
(2)
A 		5.7
(-3)
A 		15
C 14.2
(-1)
A 		6.2
(-2.4)
A 		38.6
(3)
A 		16.1
(-0.7)
A 		15.9
(-0.8)
A 		2.3
(-3)
A 		36
avr 11.3
(-0) 		14.5
(1.3) 		16.5
(2.1) 		15.2
(1.6) 		18.6
(3) 		4.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14951
Sequence Type Exemplar sequence
Representative Public ID T06A1.2 NCBI
Target Description T06A1.2 /REP_DB=WormBase Gene ID /WP=CE25980 /GEN=srj-16 /TR=O61926 /GB=AAK72089.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071136 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-16) (srj-16) mRNA, complete cds. 11/11 None
GENEFINDER00000019765 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1953740:1956232:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019761 8/11 Cross Hyb Matching Probes None
SNAP00000019762 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019767 1/11 Cross Hyb Matching Probes None
T06A1.2 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1953739-1956388(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-16
Entrez Gene 191937 Entrez gene
SwissProt O61926 EMBL-EBI
WormBase CE25980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503537 Serpentine Receptor, class J family member (srj-16) [Caenorhabditis elegans] gb|AAK72089.3| Serpentine receptor, class j protein 16 [Caenorhabditis elegans] 0.0
blast T33270 hypothetical protein T06A1.2 - Caenorhabditis elegans 0.0
blast AAD14739 Serpentine receptor, class j protein 15 [Caenorhabditis elegans] ref|NP_503539.1| Serpentine Receptor, class J family member (srj-15) [Caenorhabditis elegans] 1.0E-170
blast T33270 hypothetical protein T06A1.2 - Caenorhabditis elegans 1.0E-165
blast NP_503537 Serpentine Receptor, class J family member (srj-16) [Caenorhabditis elegans] gb|AAK72089.3| Serpentine receptor, class j protein 16 [Caenorhabditis elegans] 1.0E-159
blast AAD14739 Serpentine receptor, class j protein 15 [Caenorhabditis elegans] ref|NP_503539.1| Serpentine Receptor, class J family member (srj-15) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503537.1 7 13-30,43-65,93-115,136-158,200-222,249-271,286-308
GENEFINDER00000019765 5 55-77,98-120,162-184,211-233,248-270
Sequence
Target Sequence 
>C. ELEGANS:191176_AT
gagcaatttacatgggcgccagcaaacaagtaatggaacgaagttgggcaggaattctta
ttctgtccggagtttcaatgtatgccgtctcattgtatatagtacttgggtataagataa
tgaaaaaactgcgtgacaccccagcgatgtcagttacaaccaaaaacatgcataaacaat
tgttccgtgctctgtccgttcaaacaatcatccccatttgcatcagcttctccccttgct
tggcagcctggtatgggccggtgctaggatttgatttcggaatgtggaacaactacttgg
gagttattgccctatccgccttcccatttatggatcctgttgctgttatcctcctgcttc
ccgtctaccgaaaacgtgtttttggcatctttccaaaatctccatctattgctcccaaga
ctgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAATTTACATGGGCGCCAGCAA 200 391 569 Antisense
AATTCTTATTCTGTCCGGAGTTTCA 330 177 621 Antisense
GGAGTTTCAATGTATGCCGTCTCAT 636 517 637 Antisense
TGAAAAAACTGCGTGACACCCCAGC 447 573 689 Antisense
ACCCCAGCGATGTCAGTTACAACCA 563 89 706 Antisense
GTGCTCTGTCCGTTCAAACAATCAT 10 481 755 Antisense
CCCTTGCTTGGCAGCCTGGTATGGG 375 259 801 Antisense
ACTTGGGAGTTATTGCCCTATCCGC 199 105 863 Antisense
CGCCTTCCCATTTATGGATCCTGTT 143 257 885 Antisense
ATGGATCCTGTTGCTGTTATCCTCC 447 51 898 Antisense
CCATCTATTGCTCCCAAGACTGTGT 700 269 970 Antisense
Sequence Source Affymetrix Proprietary Database