[Home] | [Total List]

[191175_at] potassium channel protein

Description C53C9.1 /REP_DB=WormBase Gene ID /WP=CE01862 /TR=Q09935 /GB=AAB52602.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster 6grp_total > 39      4grp_total > 24      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.9
(-3)
A 		10
(-2)
A 		33.9
(0.9)
A 		51
(3)
A 		49
B 2.7
(-3)
A 		3.2
(-2.8)
A 		18.4
(3)
A 		14.6
(1.5)
A 		16
C 3
(-3)
A 		7.8
(-2.2)
A 		10.9
(-1.7)
A 		39.8
(3)
A 		37
avr 2.5
(-3) 		7
(-2.2) 		21.1
(0.4) 		35.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 44.3
(3)
A 		24.7
(0.2)
A 		6.4
(-2.4)
A 		2.5
(-3)
A 		4
(-2.8)
A 		16.4
(-1)
A 		42
B 3.9
(-3)
A 		9.1
(-1.7)
A 		17.5
(0.4)
A 		28.1
(3)
A 		20.4
(1.1)
A 		23
(1.7)
A 		24
C 8.7
(-1.9)
A 		21
(1.1)
A 		4.3
(-3)
A 		17
(0.1)
A 		28.9
(3)
A 		14.9
(-0.4)
A 		25
avr 19
(3) 		18.3
(2.6) 		9.4
(-3) 		15.9
(1.1) 		17.8
(2.3) 		18.1
(2.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		2.2
(-1.9)
A 		8.9
(3)
A 		7.5
(2)
A 		8
B 0.9
(-2.8)
A 		0.8
(-3)
A 		4.3
(3)
A 		3.1
(0.9)
A 		4
C 1
(-3)
A 		2.2
(-1.7)
A 		3.8
(-0.1)
A 		6.7
(3)
A 		6
avr 0.9
(-3) 		1.7
(-2) 		5.7
(2.9) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.2
(2.6)
A 		8.8
(3)
A 		1.4
(-2.4)
A 		0.6
(-3)
A 		1.2
(-2.6)
A 		4
(-0.5)
A 		8
B 1.4
(-3)
A 		3
(-1.7)
A 		4.3
(-0.6)
A 		7.4
(2)
A 		8.3
(2.8)
A 		8.6
(3)
A 		7
C 3.2
(-1.5)
A 		6.4
(0.8)
A 		1.1
(-3)
A 		3.4
(-1.3)
A 		9.4
(3)
A 		5
(-0.2)
A 		8
avr 4.3
(0) 		6.1
(2.7) 		2.3
(-3) 		3.8
(-0.8) 		6.3
(3) 		5.9
(2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16493
Sequence Type Exemplar sequence
Representative Public ID C53C9.1 NCBI
Target Description C53C9.1 /REP_DB=WormBase Gene ID /WP=CE01862 /TR=Q09935 /GB=AAB52602.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076899 NCBI Caenorhabditis elegans C53C9.1 (C53C9.1) mRNA, complete cds. 11/11 None
C53C9.1 ENSEMBL cdna:known chromosome:CEL140:X:7688862:7689325:1 gene:C53C9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C53C9.2 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7688860-7689353(+) 100.0 100.0
Public Domain and Genome References
Gene Title potassium channel protein
Ensembl C53C9.1
Entrez Gene 183752 Entrez gene
SwissProt Q09935 EMBL-EBI
WormBase CE36282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52602 Hypothetical protein C53C9.1 [Caenorhabditis elegans] ref|NP_509300.2| C53C9.1 [Caenorhabditis elegans] 2.0E-69
Sequence
Target Sequence 
>C. ELEGANS:191175_AT
gccggtggtgggttgggtctaatagtgtttcacgacgtgggcggatacctgtacgtgagt
cgatcttttgtagagagacagtgcggatcggagagatcgtcgcgacagacagtagagccg
cgcacttttgcttgaagagcccacaggcagatattttctctttgtttctcccattttcta
tccttacaaaaccacccacaatcgaaaacgatgagcaaacctgggtgaagatgagaaatg
gaaaagagagaaaggaaaagatgcatacaccccgccaattatcttatctcaacaatttaa
gtttctgcgtggattttgcgtggattggaaaactgaagagtgaggcgaagcagtcggtac
ataagtttatagaaatccttatcgaactgcttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGTGGTGGGTTGGGTCTAATAG 133 1 23 Antisense
TTCACGACGTGGGCGGATACCTGTA 77 687 51 Antisense
GATACCTGTACGTGAGTCGATCTTT 170 425 66 Antisense
GATCGGAGAGATCGTCGCGACAGAC 606 417 108 Antisense
GCGACAGACAGTAGAGCCGCGCACT 553 289 124 Antisense
GCCGCGCACTTTTGCTTGAAGAGCC 649 285 139 Antisense
CAGATATTTTCTCTTTGTTTCTCCC 118 207 170 Antisense
TCTCCCATTTTCTATCCTTACAAAA 468 611 189 Antisense
AAGGAAAAGATGCATACACCCCGCC 648 157 274 Antisense
GTTTCTGCGTGGATTTTGCGTGGAT 329 451 323 Antisense
AGAAATCCTTATCGAACTGCTTCAG 281 73 393 Antisense
Sequence Source Affymetrix Proprietary Database