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[191173_at]

Description F57B7.1 /REP_DB=WormBase Gene ID /WP=CE05989 /TR=Q20929 /GB=CAA98492.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 20      6grp_total > 14      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1242
1 2 3 4 range
A 1774.3
(3)
P 		895.6
(-1.3)
P 		544.5
(-3)
P 		1309.4
(0.7)
P 		1230
B 1714.4
(3)
P 		857.8
(-1.5)
P 		583.3
(-3)
P 		1257.7
(0.6)
P 		1131
C 1786.4
(3)
P 		855.7
(-1.6)
P 		584.5
(-3)
P 		1198.4
(0.1)
P 		1202
avr 1758.4
(3) 		869.7
(-1.5) 		570.8
(-3) 		1255.2
(0.5) 		1188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 879
1 2 3 4 5 6 range
A 1479
(3)
P 		1218.1
(1.2)
P 		919.2
(-0.9)
P 		842.5
(-1.4)
P 		653.6
(-2.7)
P 		607.5
(-3)
P 		872
B 1460.7
(3)
P 		1311.9
(1.9)
P 		932.7
(-0.8)
P 		794.1
(-1.7)
P 		647.9
(-2.8)
P 		618.4
(-3)
P 		842
C 1389.3
(3)
P 		1319.4
(2.5)
P 		1076.7
(0.6)
P 		1030.4
(0.3)
P 		599.9
(-3)
P 		611.8
(-2.9)
P 		789
avr 1443
(3) 		1283.1
(1.8) 		976.2
(-0.4) 		889
(-1) 		633.8
(-2.8) 		612.6
(-3) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 646
(3)
P 		194.4
(-2.4)
P 		142.4
(-3)
P 		191.7
(-2.4)
P 		504
B 546.7
(3)
P 		211.9
(-1.9)
P 		135.2
(-3)
P 		268
(-1.1)
P 		412
C 591.3
(3)
P 		246
(-2.3)
P 		203.7
(-3)
P 		202.1
(-3)
P 		389
avr 594.7
(3) 		217.4
(-2.2) 		160.4
(-3) 		220.6
(-2.2) 		434

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 272.6
(-0.4)
P 		433.2
(3)
P 		200.2
(-1.9)
P 		213.7
(-1.6)
P 		197.2
(-2)
P 		147.9
(-3)
P 		285
B 508.3
(3)
P 		436.7
(1.6)
P 		226.5
(-2.7)
P 		210.3
(-3)
P 		263.2
(-1.9)
P 		230.6
(-2.6)
P 		298
C 515
(3)
P 		402.6
(0.9)
P 		274.1
(-1.5)
P 		207.2
(-2.8)
P 		194.1
(-3)
P 		204.8
(-2.8)
P 		321
avr 432
(3) 		424.2
(2.8) 		233.6
(-2) 		210.4
(-2.6) 		218.2
(-2.4) 		194.4
(-3) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14629
Sequence Type Exemplar sequence
Representative Public ID F57B7.1 NCBI
Target Description F57B7.1 /REP_DB=WormBase Gene ID /WP=CE05989 /TR=Q20929 /GB=CAA98492.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171541(11), NM_171542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171541 NCBI Caenorhabditis elegans F57B7.1a (F57B7.1) mRNA, complete cds. 11/11 None
NM_171542 NCBI Caenorhabditis elegans F57B7.1b (F57B7.1) mRNA, complete cds. 11/11 None
SNAP00000018329 ENSEMBL cdna:SNAP chromosome:CEL140:V:11441865:11444005:1 11/11 None
GENEFINDER00000018335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11441406:11444005:1 11/11 None
F57B7.1a ENSEMBL cdna:known chromosome:CEL140:V:11441358:11444206:1 gene:F57B7.1 11/11 None
F57B7.1b ENSEMBL cdna:known chromosome:CEL140:V:11441406:11444206:1 gene:F57B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11441405-11444005(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98492 Hypothetical protein F57B7.1a [Caenorhabditis elegans] ref|NP_741629.1| F57B7.1a [Caenorhabditis elegans] 0.0
blast CAE75244 Hypothetical protein CBG23201 [Caenorhabditis briggsae] 0.0
blast CAD36492 Hypothetical protein F57B7.1b [Caenorhabditis elegans] ref|NP_741630.1| F57B7.1b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741629.1 7 33-55,68-90,110-132,153-175,223-245,307-329,344-366
NP_741630.1 7 33-55,68-90,110-132,153-175,223-245,307-329,344-366
F57B7.1a 7 33-55,68-90,110-132,153-175,223-245,307-329,344-366
F57B7.1b 7 33-55,68-90,110-132,153-175,223-245,307-329,344-366
SNAP00000018329 6 5-27,53-75,96-118,163-185,247-269,284-306
GENEFINDER00000018335 7 33-55,68-90,110-132,153-175,223-245,307-329,344-366
Sequence
Target Sequence 
>C. ELEGANS:191173_AT
aggaattatggctgtcttgtctggaatgtgttctgaagaattccgaatttacatttataa
caatctgggagacattctcgatttgttctcactttgcggttcatgttgttcattcatcat
ttactgctcaatgagtggacagttcagaaatgaattccaccgtgtctttgtacctgcaaa
ggtgagatgtctccgaatgtcatcgccgtcgattcgtcgtccatccgacgcctacagtac
cacaaaaatgacttttctaaaaccaaacgagaaaaacggaaatggaatgaatggaaatgg
cacttattcggaagatacaaggtcagcaagtgttaaaatggtcggaatccaggtacgaag
aaacagtacggaaataacgagaatgactggatgtgattcaattactccatgttctccaat
gccaacatcatttccatcatccccacttccaccgattcgaagtggagaagatgaatccac
tgatgagacatcacatctacttaacagctcaggacccaactcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAATTATGGCTGTCTTGTCTGGA 366 55 978 Antisense
GACATTCTCGATTTGTTCTCACTTT 383 371 1048 Antisense
CTCACTTTGCGGTTCATGTTGTTCA 115 229 1065 Antisense
GTTGTTCATTCATCATTTACTGCTC 65 439 1082 Antisense
TGAATTCCACCGTGTCTTTGTACCT 25 571 1128 Antisense
GAGATGTCTCCGAATGTCATCGCCG 616 395 1161 Antisense
GATTCAATTACTCCATGTTCTCCAA 345 431 1372 Antisense
AATGCCAACATCATTTCCATCATCC 432 167 1395 Antisense
TCCCCACTTCCACCGATTCGAAGTG 457 595 1417 Antisense
GACATCACATCTACTTAACAGCTCA 226 371 1464 Antisense
TTAACAGCTCAGGACCCAACTCAAC 505 683 1478 Antisense
Sequence Source Affymetrix Proprietary Database