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[191172_at] G-protein coupled receptor

Description C06B3.1 /REP_DB=WormBase Gene ID /WP=CE15593 /TR=Q17700 /GB=CAB01121.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 23      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 12.9
(-2.9)
A 		32.3
(-1.1)
A 		11.2
(-3)
A 		79.2
(3)
A 		68
B 8.9
(3)
A 		8.4
(2.6)
A 		1.3
(-3)
A 		2.7
(-1.9)
A 		8
C 25.3
(2.9)
A 		4
(-2.6)
A 		2.4
(-3)
A 		25.6
(3)
A 		23
avr 15.7
(-0.9) 		14.9
(-1.1) 		5
(-3) 		35.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 27.8
(3)
A 		2.7
(-2.7)
A 		9.1
(-1.3)
A 		16.9
(0.5)
A 		4.1
(-2.4)
A 		1.4
(-3)
A 		26
B 19.7
(0.5)
A 		24.3
(3)
A 		13.1
(-3)
A 		17.9
(-0.4)
A 		23.1
(2.4)
A 		17
(-0.9)
A 		11
C 16.5
(-0.4)
A 		30.7
(2.2)
A 		35.2
(3)
A 		2.6
(-3)
A 		2.8
(-3)
A 		3.2
(-2.9)
A 		33
avr 21.3
(3) 		19.2
(2.1) 		19.1
(2.1) 		12.5
(-0.7) 		10
(-1.8) 		7.2
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.7
(-1.8)
A 		7
(-0.2)
A 		2.9
(-3)
A 		11.6
(3)
A 		9
B 2.8
(3)
A 		2.1
(1.3)
A 		0.3
(-3)
A 		0.6
(-2.3)
A 		3
C 8.4
(3)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		4.3
(-0.2)
A 		8
avr 5.3
(2.7) 		3.4
(-0) 		1.3
(-3) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.1
(3)
A 		1
(-2.1)
A 		2
(-0.9)
A 		4.3
(2)
A 		1.2
(-1.9)
A 		0.3
(-3)
A 		5
B 6.9
(0.6)
A 		8.1
(1.7)
A 		3.2
(-3)
A 		4.7
(-1.5)
A 		9.4
(3)
A 		6.4
(0.1)
A 		6
C 6.1
(0.8)
A 		9.4
(3)
A 		9
(2.7)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		1.1
(-2.6)
A 		9
avr 6
(2.7) 		6.2
(3) 		4.7
(0.5) 		3.2
(-2) 		3.8
(-1) 		2.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13241
Sequence Type Exemplar sequence
Representative Public ID C06B3.1 NCBI
Target Description C06B3.1 /REP_DB=WormBase Gene ID /WP=CE15593 /TR=Q17700 /GB=CAB01121.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074046 NCBI Caenorhabditis elegans C06B3.1 (C06B3.1) mRNA, complete cds. 11/11 None
C06B3.1 ENSEMBL cdna:known chromosome:CEL140:V:13905384:13906475:1 gene:C06B3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008254 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13905383-13906475(+) 99.74 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl C06B3.1
Entrez Gene 182289 Entrez gene
SwissProt Q17700 EMBL-EBI
WormBase CE15593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01121 Hypothetical protein C06B3.1 [Caenorhabditis elegans] ref|NP_506447.1| C06B3.1 [Caenorhabditis elegans] 1.0E-128
blast AAC17788 Seven tm receptor protein 236 [Caenorhabditis elegans] ref|NP_503438.1| Seven TM Receptor family member (str-236) [Caenorhabditis elegans] 2.0E-50
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 5.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506447.1 5 15-32,45-67,87-109,129-151,201-223
C06B3.1 5 15-32,45-67,87-109,129-151,201-223
Sequence
Target Sequence 
>C. ELEGANS:191172_AT
gcaaccggattttttcagtcacagttcagtttttctagtgattgctagaaaagatagact
aaatttgccagtttcatttatttatattatgaatctcatgctttgcggaatgtttggaat
gtctatggcattttttgctcttcattttatataccggtatctagtaataacaggacacga
gtgggtaaaaaatgtttcattttacaagctaacaatattaatatttgctccaataatata
tggagcattgtggatgacaatagtggtcaacactatgaagcctacggaatcgtcaaataa
aattttgatggagtattttcttgattgtaaaaatttaacagtcgacgatatcaattatgt
cggaccaaattactacgagacttttcacggggaccctcaactaaactgggatgcattgaa
tggaatgctcttgcttgatattatggtggcattttcagtagccatcattatagtttttgc
tataaaatgctataaaaaagtaaatattctcgcaaattccgtgcaatattcgaaagcttt
ccgtgatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACCGGATTTTTTCAGTCACAGT 634 319 198 Antisense
TCAGTCACAGTTCAGTTTTTCTAGT 226 623 212 Antisense
GATAGACTAAATTTGCCAGTTTCAT 248 425 250 Antisense
GTGGTCAACACTATGAAGCCTACGG 347 489 460 Antisense
GACGATATCAATTATGTCGGACCAA 578 377 541 Antisense
CAAATTACTACGAGACTTTTCACGG 155 189 563 Antisense
TTCACGGGGACCCTCAACTAAACTG 364 585 581 Antisense
GAATGGAATGCTCTTGCTTGATATT 233 333 615 Antisense
GCATTTTCAGTAGCCATCATTATAG 336 307 646 Antisense
ATATTCTCGCAAATTCCGTGCAATA 321 19 701 Antisense
ATATTCGAAAGCTTTCCGTGATCTT 359 19 723 Antisense
Sequence Source Affymetrix Proprietary Database