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[191171_at] 7TM chemoreceptor, str family

Description B0213.8 /REP_DB=WormBase Gene ID /WP=CE16779 /GEN=str-82 /TR=O44660 /GB=AAC47933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 48      4grp_total > 04      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 29.7
(-0.1)
A 		17.3
(-1.9)
A 		9.9
(-3)
A 		50.9
(3)
A 		41
B 15.1
(-2.2)
A 		6.9
(-3)
A 		7.6
(-2.9)
A 		72.3
(3)
A 		65
C 24.5
(2.2)
A 		9
(-3)
A 		16.5
(-0.5)
A 		27
(3)
A 		18
avr 23.1
(-1.2) 		11.1
(-3) 		11.3
(-3) 		50.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 17.2
(3)
A 		9.3
(-1.1)
A 		6.3
(-2.7)
A 		5.7
(-3)
A 		6.2
(-2.7)
A 		7.8
(-1.9)
A 		12
B 11.7
(-1.3)
A 		10
(-1.7)
A 		5.2
(-3)
A 		9.2
(-2)
A 		5.6
(-2.9)
A 		28.1
(3)
A 		23
C 38.8
(2.4)
A 		14.9
(-1.5)
A 		5.8
(-3)
A 		42.3
(3)
A 		26.2
(0.4)
A 		36.8
(2.1)
A 		37
avr 22.6
(2.5) 		11.4
(-1.2) 		5.8
(-3) 		19.1
(1.3) 		12.7
(-0.8) 		24.2
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.8
(3)
A 		3.8
(-2.1)
A 		2.6
(-3)
A 		7.5
(0.6)
A 		8
B 4.8
(-1.6)
A 		1.7
(-3)
A 		1.8
(-3)
A 		15.4
(3)
A 		14
C 8.1
(3)
A 		2.6
(-3)
A 		5.8
(0.5)
A 		4.6
(-0.8)
A 		6
avr 7.9
(1.8) 		2.7
(-3) 		3.4
(-2.4) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(2.7)
A 		3.3
(3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		1.9
(-1.4)
A 		1.9
(-1.4)
A 		2
B 4.1
(-1.2)
A 		3.3
(-1.7)
A 		1.3
(-3)
A 		2.4
(-2.3)
A 		2.3
(-2.3)
A 		10.5
(3)
A 		9
C 14.4
(3)
A 		4.6
(-1.6)
A 		1.5
(-3)
A 		8.5
(0.3)
A 		8.5
(0.3)
A 		12.3
(2)
A 		13
avr 7.2
(2.1) 		3.7
(-1) 		1.4
(-3) 		4.1
(-0.6) 		4.2
(-0.5) 		8.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15277
Sequence Type Exemplar sequence
Representative Public ID B0213.8 NCBI
Target Description B0213.8 /REP_DB=WormBase Gene ID /WP=CE16779 /GEN=str-82 /TR=O44660 /GB=AAC47933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071704(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071704 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-82) (str-82) mRNA, complete cds. 10/11 None
GENEFINDER00000025877 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3974609:3976570:1 10/11 None
B0213.8 ENSEMBL cdna:known chromosome:CEL140:V:3974474:3976077:1 gene:B0213.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025856 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3974473-3976077(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-82
Ensembl B0213.8
Entrez Gene 191989 Entrez gene
SwissProt O44660 EMBL-EBI
WormBase CE35206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47933 Seven tm receptor protein 82 [Caenorhabditis elegans] ref|NP_504105.2| Seven TM Receptor family member (str-82) [Caenorhabditis elegans] 0.0
blast AAC47941 Seven tm receptor protein 83 [Caenorhabditis elegans] ref|NP_504106.1| Seven TM Receptor family member (str-83) [Caenorhabditis elegans] 1.0E-137
blast CAE58181 Hypothetical protein CBG01273 [Caenorhabditis briggsae] 1.0E-130
blast AAC47941 Seven tm receptor protein 83 [Caenorhabditis elegans] ref|NP_504106.1| Seven TM Receptor family member (str-83) [Caenorhabditis elegans] 1.0E-122
blast CAE58181 Hypothetical protein CBG01273 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504105.2 7 10-31,52-74,89-111,132-154,202-224,250-272,285-307
B0213.8 7 10-31,52-74,89-111,132-154,202-224,250-272,285-307
GENEFINDER00000025877 6 7-29,44-66,87-109,157-179,205-227,240-262
Sequence
Target Sequence 
>C. ELEGANS:191171_AT
tcagccagatggcattcaccttggtgtcgtatgcattacagaagcaaggagaaaatggaa
aagtgttgccaaattatttgaacattgcaatgatagtttatttgctagcatgtgcgatga
ttccaatgaatatttcactttcttgtggtattaaaacatggcttaaaattcgtagcacaa
taaacatggctcaaaaatcacggcatttgcaaaaacaggaacgccagctgtttttcgctt
tacttatccagtttacaattccatttattggcaacactgtgccaatgttgatattattct
tctgtccagcacttcatatttcaacagaaccctatacaaattatatttgcatgcccgtcc
cgttttacccaattttcgacgccctagcaacaacttttgtaattaaagactattacaggg
gaataatgagaattttcggattgtccagatacattaaagaaagttccacagcaaccggta
tccgtgttcccgccaacacgttaggagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCAGATGGCATTCACCTTGGT 84 623 539 Antisense
TTCACCTTGGTGTCGTATGCATTAC 390 687 553 Antisense
GCTAGCATGTGCGATGATTCCAATG 573 301 642 Antisense
GAATATTTCACTTTCTTGTGGTATT 51 327 666 Antisense
ACAGGAACGCCAGCTGTTTTTCGCT 70 95 753 Antisense
TGTTTTTCGCTTTACTTATCCAGTT 394 561 767 Antisense
ATTATTCTTCTGTCCAGCACTTCAT 112 15 831 Antisense
CAAATTATATTTGCATGCCCGTCCC 596 193 875 Antisense
AATTTTCGACGCCCTAGCAACAACT 184 175 909 Antisense
CCACAGCAACCGGTATCCGTGTTCC 199 275 1004 Antisense
GTTCCCGCCAACACGTTAGGAGAGC 253 439 1024 Antisense
Sequence Source Affymetrix Proprietary Database