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[191170_at] 7TM receptor, srx family

Description F09F3.2 /REP_DB=WormBase Gene ID /WP=CE09285 /TR=P90816 /GB=CAB02901.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 64      4grp_total > 09      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 1.6
(-3)
A 		5.7
(-2.7)
A 		5.2
(-2.7)
A 		72.9
(3)
A 		71
B 2.5
(-2.8)
A 		1.6
(-3)
A 		26.6
(3)
A 		14.5
(0.1)
A 		25
C 21.2
(-1.6)
A 		38.2
(-0.1)
A 		6
(-3)
A 		73.5
(3)
A 		68
avr 8.4
(-3) 		15.2
(-2.1) 		12.6
(-2.4) 		53.6
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.5
(-2.8)
A 		1.2
(-3)
A 		34.5
(3)
A 		11.8
(-1.1)
A 		1.6
(-2.9)
A 		30.2
(2.2)
A 		33
B 1.3
(-3)
A 		1.5
(-2.9)
A 		19.4
(3)
A 		8.9
(-0.5)
A 		4.6
(-1.9)
A 		10.9
(0.2)
A 		18
C 14.1
(1.4)
A 		1.4
(-3)
A 		7.3
(-1)
A 		8.1
(-0.7)
A 		18.7
(3)
A 		1.8
(-2.9)
A 		17
avr 6
(-1.5) 		1.4
(-3) 		20.4
(3) 		9.6
(-0.4) 		8.3
(-0.8) 		14.3
(1.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.6
(-3)
A 		1.2
(-2.6)
A 		1.4
(-2.5)
A 		10.7
(3)
A 		10
B 0.8
(-2.6)
A 		0.4
(-3)
A 		6.2
(3)
A 		3.1
(-0.2)
A 		6
C 7
(-0.1)
A 		11
(2.2)
A 		2.1
(-3)
A 		12.4
(3)
A 		10
avr 2.8
(-3) 		4.2
(-1.6) 		3.2
(-2.6) 		8.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-2.9)
A 		0.4
(-3)
A 		7.5
(3)
A 		3
(-0.8)
A 		0.5
(-2.9)
A 		7.4
(2.9)
A 		7
B 0.5
(-3)
A 		0.5
(-3)
A 		4.7
(3)
A 		2.4
(-0.3)
A 		1.9
(-1)
A 		4.1
(2.1)
A 		4
C 5.2
(2.1)
A 		0.4
(-3)
A 		1.9
(-1.4)
A 		1.6
(-1.7)
A 		6
(3)
A 		0.6
(-2.8)
A 		6
avr 2.1
(-0.6) 		0.4
(-3) 		4.7
(3) 		2.3
(-0.3) 		2.8
(0.3) 		4
(2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14401
Sequence Type Exemplar sequence
Representative Public ID F09F3.2 NCBI
Target Description F09F3.2 /REP_DB=WormBase Gene ID /WP=CE09285 /TR=P90816 /GB=CAB02901.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074028 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-131) (srx-131) mRNA, complete cds. 11/11 None
F09F3.2 ENSEMBL cdna:known chromosome:CEL140:V:13848025:13849316:1 gene:F09F3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022403 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13848024-13849316(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-131
Ensembl F09F3.2
Entrez Gene 184250 Entrez gene
SwissProt P90816 EMBL-EBI
WormBase CE36288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02901 Hypothetical protein F09F3.2 [Caenorhabditis elegans] ref|NP_506429.2| Serpentine Receptor, class X family member (srx-131) [Caenorhabditis elegans] 0.0
blast T20666 hypothetical protein F09F3.3 - Caenorhabditis elegans 2.0E-85
blast CAF31478 Hypothetical protein F55B12.9 [Caenorhabditis elegans] ref|NP_001023977.1| Serpentine Receptor, class X family member (srx-129) [Caenorhabditis elegans] 7.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506429.2 7 18-40,61-83,93-115,122-144,149-171,184-206,262-284
F09F3.2 7 18-40,61-83,93-115,122-144,149-171,184-206,262-284
Sequence
Target Sequence 
>C. ELEGANS:191170_AT
ggtgttatggcagctacatgggcatattttacaaattcacttcttactatttgcctgtct
tctaatagattttattgtttgtatttcccgtttggcataaagtttctaattggaattcca
attacaacatgtgctatttctgcagttctttttatcactttggccatcagtgtgctctca
ctaattgctggatgtagctgcatttttgacccaaacatatttatttggaccggcaaagga
acactttgtgaagaatatgcatcaatatatgttcccgcttttatttttgtaacaacagca
atcactaattcaattaatattatgacggctaacgttgtccaggattgtctccaacttatc
gatatcatcaattcatattatttgtgcaaactaaacgaggacttatggtttcaaatagtt
acagtcacgttttctttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTTATGGCAGCTACATGGGCAT 241 499 298 Antisense
ATTCACTTCTTACTATTTGCCTGTC 84 13 332 Antisense
TATTGTTTGTATTTCCCGTTTGGCA 232 665 370 Antisense
GCTATTTCTGCAGTTCTTTTTATCA 109 305 430 Antisense
TCACTTTGGCCATCAGTGTGCTCTC 299 627 452 Antisense
TGTGCTCTCACTAATTGCTGGATGT 361 557 468 Antisense
GGATGTAGCTGCATTTTTGACCCAA 674 513 487 Antisense
TATATGTTCCCGCTTTTATTTTTGT 188 661 563 Antisense
ACGGCTAACGTTGTCCAGGATTGTC 93 3 622 Antisense
TTGTCTCCAACTTATCGATATCATC 333 709 642 Antisense
TAGTTACAGTCACGTTTTCTTTCCT 612 651 713 Antisense
Sequence Source Affymetrix Proprietary Database