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[191169_at] 7TM chemoreceptor, str family

Description T27C4.3 /REP_DB=WormBase Gene ID /WP=CE18297 /GEN=str-30 /TR=O61905 /GB=AAC17701.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 80      4grp_total > 19      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.2
(3)
A 		1.8
(-3)
A 		2
(-2.1)
A 		2
(-2.1)
A 		1
B 5.2
(-2)
A 		4.3
(-2.9)
A 		4.2
(-3)
A 		10.2
(3)
A 		6
C 4.1
(-2.6)
A 		25.3
(0.6)
A 		1.6
(-3)
A 		41
(3)
A 		39
avr 4.2
(-2.4) 		10.5
(0.1) 		2.6
(-3) 		17.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.2
(-0.8)
A 		1.9
(-2.7)
A 		4.1
(-1.9)
A 		18.3
(3)
A 		0.9
(-3)
A 		2.3
(-2.5)
A 		17
B 3.1
(-2)
A 		2.4
(-2.5)
A 		1.5
(-3)
A 		11.4
(3)
A 		3.8
(-1.6)
A 		4
(-1.5)
A 		10
C 3.6
(-2.5)
A 		2.6
(-3)
A 		2.7
(-3)
A 		14.7
(3)
A 		3.1
(-2.8)
A 		4.8
(-1.9)
A 		12
avr 4.6
(-1.9) 		2.3
(-3) 		2.8
(-2.8) 		14.8
(3) 		2.6
(-2.9) 		3.7
(-2.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(3)
A 		0.4
(-2.3)
A 		0.5
(-1.7)
A 		0.3
(-3)
A 		1
B 1.7
(0.5)
A 		1
(-3)
A 		1
(-3)
A 		2.2
(3)
A 		1
C 1.4
(-2.3)
A 		7.3
(3)
A 		0.6
(-3)
A 		6.9
(2.6)
A 		7
avr 1.4
(-1.3) 		2.9
(2.5) 		0.7
(-3) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.3
(-1.6)
A 		0.7
(-2.4)
A 		0.9
(-2.2)
A 		4.6
(3)
A 		0.3
(-3)
A 		0.6
(-2.6)
A 		4
B 1.1
(-1.4)
A 		0.8
(-2.1)
A 		0.4
(-3)
A 		3
(3)
A 		1.6
(-0.2)
A 		1.5
(-0.5)
A 		3
C 1.3
(-1.4)
A 		0.8
(-2.7)
A 		0.7
(-3)
A 		3
(3)
A 		1
(-2.2)
A 		1.6
(-0.7)
A 		2
avr 1.2
(-1.9) 		0.8
(-2.8) 		0.7
(-3) 		3.5
(3) 		1
(-2.4) 		1.2
(-1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15782
Sequence Type Exemplar sequence
Representative Public ID T27C4.3 NCBI
Target Description T27C4.3 /REP_DB=WormBase Gene ID /WP=CE18297 /GEN=str-30 /TR=O61905 /GB=AAC17701.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071633 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-30) (str-30) mRNA, complete cds. 11/11 None
GENEFINDER00000000367 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3725235:3726764:1 11/11 None
T27C4.3 ENSEMBL cdna:known chromosome:CEL140:V:3724887:3726590:1 gene:T27C4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000363 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3724886-3726590(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-30
Ensembl T27C4.3
Entrez Gene 191972 Entrez gene
SwissProt O61905 EMBL-EBI
WormBase CE18297 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17701 Seven tm receptor protein 30 [Caenorhabditis elegans] ref|NP_504034.1| Seven TM Receptor family member (str-30) [Caenorhabditis elegans] 0.0
blast NP_504932 Seven TM Receptor family member (str-31) [Caenorhabditis elegans] gb|AAG24019.1| Seven tm receptor protein 31 [Caenorhabditis elegans] 1.0E-105
blast CAE62316 Hypothetical protein CBG06382 [Caenorhabditis briggsae] 1.0E-103
blast AAC17701 Seven tm receptor protein 30 [Caenorhabditis elegans] ref|NP_504034.1| Seven TM Receptor family member (str-30) [Caenorhabditis elegans] 4.0E-78
blast CAE62316 Hypothetical protein CBG06382 [Caenorhabditis briggsae] 4.0E-44
blast NP_504932 Seven TM Receptor family member (str-31) [Caenorhabditis elegans] gb|AAG24019.1| Seven tm receptor protein 31 [Caenorhabditis elegans] 8.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504034.1 7 12-34,46-68,88-110,131-153,197-219,247-269,279-301
T27C4.3 7 12-34,46-68,88-110,131-153,197-219,247-269,279-301
GENEFINDER00000000367 5 15-37,141-163,229-251,279-301,311-333
Sequence
Target Sequence 
>C. ELEGANS:191169_AT
aaaatcatttttctcatcagctggcctttattttttggaatagctgcgacgggagtggtt
atcctgttcggaccgattgatgattacgcgcgcgagtatacaaaagaggttatgatggaa
agttatggtattgccacggaaaatatctcgggatattctgtgattgcatatgaccaaaat
ggaaatcttcactggaatagtcttgcattcacctcgggaattatctcacttatggagatt
cagttcctcattgttggaattttcggatttcgaatgtatttcagaatgaacattttgctt
caaaatgtctcaaaatcatatgaaatgattcaaaggcaatttttcaaaagtttgatctac
cagataacttcacctacttttaccttctacatacctgccattctcatactcacagtgcca
ttttttgacttgaaattcaatcttcccactggccttattgtgtgctcattttcaatttat
cctccaatcgacagcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCATTTTTCTCATCAGCTGGC 630 131 400 Antisense
CATCAGCTGGCCTTTATTTTTTGGA 178 213 414 Antisense
AGCTGCGACGGGAGTGGTTATCCTG 575 79 441 Antisense
TGGTTATCCTGTTCGGACCGATTGA 285 505 455 Antisense
GACCGATTGATGATTACGCGCGCGA 206 383 470 Antisense
TGGAATAGTCTTGCATTCACCTCGG 296 547 592 Antisense
TCACCTCGGGAATTATCTCACTTAT 103 625 608 Antisense
GATCTACCAGATAACTTCACCTACT 25 421 753 Antisense
CATTCTCATACTCACAGTGCCATTT 228 217 798 Antisense
CCCACTGGCCTTATTGTGTGCTCAT 285 259 844 Antisense
AATTTATCCTCCAATCGACAGCATT 361 175 873 Antisense
Sequence Source Affymetrix Proprietary Database